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Title: Enabling X-ray free electron laser crystallography for challenging biological systems from a limited number of crystals

Abstract

There is considerable potential for X-ray free electron lasers (XFELs) to enable determination of macromolecular crystal structures that are difficult to solve using current synchrotron sources. Prior XFEL studies often involved the collection of thousands to millions of diffraction images, in part due to limitations of data processing methods. We implemented a data processing system based on classical post-refinement techniques, adapted to specific properties of XFEL diffraction data. When applied to XFEL data from three different proteins collected using various sample delivery systems and XFEL beam parameters, our method improved the quality of the diffraction data as well as the resulting refined atomic models and electron density maps. Moreover, the number of observations for a reflection necessary to assemble an accurate data set could be reduced to a few observations. In conclusion, these developments will help expand the applicability of XFEL crystallography to challenging biological systems, including cases where sample is limited.

Authors:
 [1];  [1];  [1]; ORCiD logo [2];  [3];  [3]; ORCiD logo [1]; ORCiD logo [1]
  1. Stanford Univ., Stanford, CA (United States)
  2. Janelia Research Campus, Ashburn, VA (United States)
  3. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Publication Date:
Research Org.:
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC)
OSTI Identifier:
1184051
Alternate Identifier(s):
OSTI ID: 1209798; OSTI ID: 1257268
Grant/Contract Number:
GM103393; GM095887; AC02-05CH11231; GM102520
Resource Type:
Journal Article: Published Article
Journal Name:
eLife
Additional Journal Information:
Journal Volume: 4; Journal ID: ISSN 2050-084X
Publisher:
eLife Sciences Publications, Ltd.
Country of Publication:
United States
Language:
English
Subject:
36 MATERIALS SCIENCE; 59 BASIC BIOLOGICAL SCIENCES

Citation Formats

Uervirojnangkoorn, Monarin, Zeldin, Oliver B., Lyubimov, Artem Y., Hattne, Johan, Brewster, Aaron S., Sauter, Nicholas K., Brunger, Axel T., and Weis, William I. Enabling X-ray free electron laser crystallography for challenging biological systems from a limited number of crystals. United States: N. p., 2015. Web. doi:10.7554/eLife.05421.
Uervirojnangkoorn, Monarin, Zeldin, Oliver B., Lyubimov, Artem Y., Hattne, Johan, Brewster, Aaron S., Sauter, Nicholas K., Brunger, Axel T., & Weis, William I. Enabling X-ray free electron laser crystallography for challenging biological systems from a limited number of crystals. United States. doi:10.7554/eLife.05421.
Uervirojnangkoorn, Monarin, Zeldin, Oliver B., Lyubimov, Artem Y., Hattne, Johan, Brewster, Aaron S., Sauter, Nicholas K., Brunger, Axel T., and Weis, William I. Tue . "Enabling X-ray free electron laser crystallography for challenging biological systems from a limited number of crystals". United States. doi:10.7554/eLife.05421.
@article{osti_1184051,
title = {Enabling X-ray free electron laser crystallography for challenging biological systems from a limited number of crystals},
author = {Uervirojnangkoorn, Monarin and Zeldin, Oliver B. and Lyubimov, Artem Y. and Hattne, Johan and Brewster, Aaron S. and Sauter, Nicholas K. and Brunger, Axel T. and Weis, William I.},
abstractNote = {There is considerable potential for X-ray free electron lasers (XFELs) to enable determination of macromolecular crystal structures that are difficult to solve using current synchrotron sources. Prior XFEL studies often involved the collection of thousands to millions of diffraction images, in part due to limitations of data processing methods. We implemented a data processing system based on classical post-refinement techniques, adapted to specific properties of XFEL diffraction data. When applied to XFEL data from three different proteins collected using various sample delivery systems and XFEL beam parameters, our method improved the quality of the diffraction data as well as the resulting refined atomic models and electron density maps. Moreover, the number of observations for a reflection necessary to assemble an accurate data set could be reduced to a few observations. In conclusion, these developments will help expand the applicability of XFEL crystallography to challenging biological systems, including cases where sample is limited.},
doi = {10.7554/eLife.05421},
journal = {eLife},
number = ,
volume = 4,
place = {United States},
year = {Tue Mar 17 00:00:00 EDT 2015},
month = {Tue Mar 17 00:00:00 EDT 2015}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record at 10.7554/eLife.05421

Citation Metrics:
Cited by: 34 works
Citation information provided by
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