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Apparatus and method for determining microscale interactions based on compressive sensors such as crystal structures

Patent ·
OSTI ID:1178238
;

Techniques for determining values for a metric of microscale interactions include determining a mesoscale metric for a plurality of mesoscale interaction types, wherein a value of the mesoscale metric for each mesoscale interaction type is based on a corresponding function of values of the microscale metric for the plurality of the microscale interaction types. A plurality of observations that indicate the values of the mesoscale metric are determined for the plurality of mesoscale interaction types. Values of the microscale metric are determined for the plurality of microscale interaction types based on the plurality of observations and the corresponding functions and compressed sensing.

Research Organization:
Leland Stanford Jr. Univ., Palo Alto, CA (United States)
Sponsoring Organization:
USDOE
DOE Contract Number:
FG02-05ER64136
Assignee:
The Board of Trustees of the Leland Stanford Jr. University (Palo Alto, CA)
Patent Number(s):
9,014,988
Application Number:
13/426,824
OSTI ID:
1178238
Country of Publication:
United States
Language:
English

References (14)

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The Dantzig selector: Statistical estimation when p is much larger than n journal December 2007
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Protein-DNA binding specificity predictions with structural models journal October 2005
An all-atom, distance-dependent scoring function for the prediction of protein-DNA interactions from structure journal October 2006
A Probabilistic and RIPless Theory of Compressed Sensing journal November 2011
Quantitative Robust Uncertainty Principles and Optimally Sparse Decompositions journal December 2005
Regularization Paths for Generalized Linear Models via Coordinate Descent journal January 2010
Identification of rare alleles and their carriers using compressed se(que)nsing journal August 2010
On the conditioning of random subdictionaries journal July 2008
Regression shrinkage and selection via the lasso: a retrospective: Regression Shrinkage and Selection via the Lasso journal April 2011
Prediction of TF target sites based on atomistic models of protein-DNA complexes journal October 2008

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