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Title: Transcriptomic and proteomic dynamics in the metabolism of a diazotrophic cyanobacterium, Cyanothece sp. PCC 7822 during a diurnal light–dark cycle

Abstract

Cyanothece sp. PCC 7822 is an excellent cyanobacterial model organism with great potential to be applied as a biocatalyst for the production of high value compounds. Like other unicellular diazotrophic cyanobacterial species, it has a tightly regulated metabolism synchronized to the light-dark cycle. Utilizing transcriptomic and proteomic methods, we were able to quantify the relationships between transcription and translation underlying central and secondary metabolism in response to nitrogen free, 12 hour light and 12 hour dark conditions.

Authors:
; ; ; ; ; ; ; ; ; ; ;
Publication Date:
Research Org.:
Pacific Northwest National Laboratory (PNNL), Richland, WA (US), Environmental Molecular Sciences Laboratory (EMSL)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER) (SC-23)
OSTI Identifier:
1170102
Report Number(s):
PNNL-SA-104956
Journal ID: ISSN 1471-2164; PII: 1471-2164-15-1185
Grant/Contract Number:
AC05-76RL01830
Resource Type:
Journal Article: Accepted Manuscript
Journal Name:
BMC Genomics
Additional Journal Information:
Journal Volume: 15; Journal Issue: 1; Journal ID: ISSN 1471-2164
Publisher:
Springer
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; 09 BIOMASS FUELS; Environmental Molecular Sciences Laboratory

Citation Formats

Welkie, David, Zhang, Xiaohui, Markillie, Meng, Taylor, Ronald, Orr, Galya, Jacobs, Jon, Bhide, Ketaki, Thimmapuram, Jyothi, Gritsenko, Marina, Mitchell, Hugh, Smith, Richard D, and Sherman, Louis A. Transcriptomic and proteomic dynamics in the metabolism of a diazotrophic cyanobacterium, Cyanothece sp. PCC 7822 during a diurnal light–dark cycle. United States: N. p., 2014. Web. doi:10.1186/1471-2164-15-1185.
Welkie, David, Zhang, Xiaohui, Markillie, Meng, Taylor, Ronald, Orr, Galya, Jacobs, Jon, Bhide, Ketaki, Thimmapuram, Jyothi, Gritsenko, Marina, Mitchell, Hugh, Smith, Richard D, & Sherman, Louis A. Transcriptomic and proteomic dynamics in the metabolism of a diazotrophic cyanobacterium, Cyanothece sp. PCC 7822 during a diurnal light–dark cycle. United States. doi:10.1186/1471-2164-15-1185.
Welkie, David, Zhang, Xiaohui, Markillie, Meng, Taylor, Ronald, Orr, Galya, Jacobs, Jon, Bhide, Ketaki, Thimmapuram, Jyothi, Gritsenko, Marina, Mitchell, Hugh, Smith, Richard D, and Sherman, Louis A. Mon . "Transcriptomic and proteomic dynamics in the metabolism of a diazotrophic cyanobacterium, Cyanothece sp. PCC 7822 during a diurnal light–dark cycle". United States. doi:10.1186/1471-2164-15-1185. https://www.osti.gov/servlets/purl/1170102.
@article{osti_1170102,
title = {Transcriptomic and proteomic dynamics in the metabolism of a diazotrophic cyanobacterium, Cyanothece sp. PCC 7822 during a diurnal light–dark cycle},
author = {Welkie, David and Zhang, Xiaohui and Markillie, Meng and Taylor, Ronald and Orr, Galya and Jacobs, Jon and Bhide, Ketaki and Thimmapuram, Jyothi and Gritsenko, Marina and Mitchell, Hugh and Smith, Richard D and Sherman, Louis A},
abstractNote = {Cyanothece sp. PCC 7822 is an excellent cyanobacterial model organism with great potential to be applied as a biocatalyst for the production of high value compounds. Like other unicellular diazotrophic cyanobacterial species, it has a tightly regulated metabolism synchronized to the light-dark cycle. Utilizing transcriptomic and proteomic methods, we were able to quantify the relationships between transcription and translation underlying central and secondary metabolism in response to nitrogen free, 12 hour light and 12 hour dark conditions.},
doi = {10.1186/1471-2164-15-1185},
journal = {BMC Genomics},
number = 1,
volume = 15,
place = {United States},
year = {Mon Dec 29 00:00:00 EST 2014},
month = {Mon Dec 29 00:00:00 EST 2014}
}

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Cited by: 11 works
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