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Title: The roles of RIIbeta linker and N-terminal cyclic nucleotide-binding domain in determining the unique structures of Type IIbeta Protein Kinase A. A small angle X-ray and neutron scattering study

Journal Article · · Journal of Biological Chemistry
 [1];  [2];  [2];  [2];  [3];  [2]
  1. Univ. of Utah, Salt Lake City, UT (United States)
  2. Univ. of California, San Diego, CA (United States)
  3. Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)

Protein kinase A (PKA) is ubiquitously expressed and is responsible for regulating many important cellular functions in response to changes in intracellular cAMP concentrations. Moreover, the PKA holoenzyme is a tetramer (R2:C2), with a regulatory subunit homodimer (R2) that binds and inhibits two catalytic (C) subunits; binding of cAMP to the regulatory subunit homodimer causes activation of the catalytic subunits. Four different R subunit isoforms exist in mammalian cells, and these confer different structural features, subcellular localization, and biochemical properties upon the PKA holoenzymes they form. The holoenzyme containing RIIβ is structurally unique in that the type IIβ holoenzyme is much more compact than the free RIIβ homodimer. We have used small angle x-ray scattering and small angle neutron scattering to study the solution structure and subunit organization of a holoenzyme containing an RIIβ C-terminal deletion mutant (RIIβ(1–280)), which is missing the C-terminal cAMP-binding domain to better understand the structural organization of the type IIβ holoenzyme and the RIIβ domains that contribute to stabilizing the holoenzyme conformation. These results demonstrate that compaction of the type IIβ holoenzyme does not require the C-terminal cAMP-binding domain but rather involves large structural rearrangements within the linker and N-terminal cyclic nucleotide-binding domain of the RIIβ homodimer. The structural rearrangements are significantly greater than seen previously with RIIα and are likely to be important in mediating short range and long range interdomain and intersubunit interactions that uniquely regulate the activity of the type IIβ isoform of PKA.

Research Organization:
Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). High Flux Isotope Reactor (HFIR); Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). Spallation Neutron Source (SNS); Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). Center for Structural Molecular Biology (CSMB)
Sponsoring Organization:
USDOE Office of Science (SC)
Grant/Contract Number:
AC05-00OR22725
OSTI ID:
1163593
Journal Information:
Journal of Biological Chemistry, Vol. 289, Issue 41; ISSN 0021-9258
Publisher:
American Society for Biochemistry and Molecular BiologyCopyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 3 works
Citation information provided by
Web of Science

References (26)

Recurrent somatic mutations underlie corticotropin-independent Cushing's syndrome journal May 2014
Expression of the catalytic subunit of cAMP-dependent protein kinase in Escherichia coli : multiple isozymes reflect different phosphorylation states journal January 1993
Signaling through dynamic linkers as revealed by PKA journal August 2013
Differential Effects of Substrate on Type I and Type II PKA Holoenzyme Dissociation journal May 2004
Comparison of neutron and X-ray scattering of dilute myoglobin solutions journal April 1975
Structure and Allostery of the PKA RII  Tetrameric Holoenzyme journal February 2012
C Subunits Binding to the Protein Kinase A RIα Dimer Induce a Large Conformational Change journal April 2004
Determination of the regularization parameter in indirect-transform methods using perceptual criteria journal August 1992
Activating hotspot L205R mutation in PRKACA and adrenal Cushing's syndrome journal April 2014
Localization and quaternary structure of the PKA RI  holoenzyme journal July 2012
Recurrent activating mutation in PRKACA in cortisol-producing adrenal tumors journal April 2014
PRIMUS: a Windows PC-based system for small-angle scattering data analysis journal September 2003
New developments in the ATSAS program package for small-angle scattering data analysis journal March 2012
cAMP-dependent Protein Kinase Regulatory Subunit Type IIβ journal February 2004
Reduction and analysis of SANS and USANS data using IGOR Pro journal November 2006
ELLSTAT : shape modeling for solution small-angle scattering of proteins and protein complexes with automated statistical characterization journal September 2006
MULCh : modules for the analysis of small-angle neutron contrast variation data from biomolecular assemblies journal January 2008
Mutations of the gene encoding the protein kinase A type I-α regulatory subunit in patients with the Carney complex journal September 2000
Conformational Differences Among Solution Structures of the Type Iα, IIα and IIβ Protein Kinase A Regulatory Subunit Homodimers: Role of the Linker Regions journal April 2004
Constitutive Activation of PKA Catalytic Subunit in Adrenal Cushing's Syndrome journal March 2014
Bio-SANS—A dedicated facility for neutron structural biology at Oak Ridge National Laboratory journal November 2006
Solution Scattering Reveals Large Differences in the Global Structures of Type II Protein Kinase A Isoforms journal March 2006
ORNL_SAS : software for calculation of small-angle scattering intensities of proteins and protein complexes journal July 2007
UCSF Chimera?A visualization system for exploratory research and analysis journal January 2004
Quaternary Structures of a Catalytic Subunit-Regulatory Subunit Dimeric Complex and the Holoenzyme of the cAMP-dependent Protein Kinase by Neutron Contrast Variation journal November 1998
Assembly of allosteric macromolecular switches: lessons from PKA journal September 2012