Exploiting proteomic data for genome annotation and gene model validation in Aspergillus niger

James C, Wright; Deana, Sugden; Sue, Francis-McIntyre; Isabel, Riba-Garcia; Simon J, Gaskell; Igor V, Grigoriev; Scott E, Baker; Robert J, Beynon; Simon J, Hubbard

doi:10.1186/1471-2164-10-61

Title: Exploiting proteomic data for genome annotation and gene model validation in Aspergillus niger

Journal Article · Thu Jan 01 00:00:00 EST 2009 · BMC Genomics

DOI:https://doi.org/10.1186/1471-2164-10-61· OSTI ID:1153955

James C, Wright; Deana, Sugden; Sue, Francis-McIntyre; Isabel, Riba-Garcia; Simon J, Gaskell; Igor V, Grigoriev; Scott E, Baker; Robert J, Beynon; Simon J, Hubbard

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Research Organization:: USDOE Joint Genome Institute (JGI), Berkeley, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER)

OSTI ID:: 1153955

Journal Information:: BMC Genomics, Vol. 10, Issue 1; ISSN 1471-2164

Country of Publication:: United States

Language:: English

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Genome annotation of a Saccharomyces sp. lager brewer's yeast De León-Medina, Patricia Marcela; Elizondo-González, Ramiro; Damas-Buenrostro, Luis Cástulo Genomics Data, Vol. 9 https://doi.org/10.1016/j.gdata.2016.05.009	journal	September 2016
Experimental annotation of post-translational features and translated coding regions in the pathogen Salmonella Typhimurium Ansong, Charles; Tolić, Nikola; Purvine, Samuel O. BMC Genomics, Vol. 12, Issue 1 https://doi.org/10.1186/1471-2164-12-433	journal	August 2011
Expression and export: recombinant protein production systems for Aspergillus Fleißner, André; Dersch, Petra Applied Microbiology and Biotechnology, Vol. 87, Issue 4 https://doi.org/10.1007/s00253-010-2672-6	journal	June 2010
Deep proteogenomics; high throughput gene validation by multidimensional liquid chromatography and mass spectrometry of proteins from the fungal wheat pathogen Stagonospora nodorum Bringans, Scott; Hane, James K.; Casey, Tammy BMC Bioinformatics, Vol. 10, Issue 1 https://doi.org/10.1186/1471-2105-10-301	journal	September 2009
AssessORF: combining evolutionary conservation and proteomics to assess prokaryotic gene predictions Korandla, Deepank R.; Wozniak, Jacob M.; Campeau, Anaamika Bioinformatics https://doi.org/10.1093/bioinformatics/btz714	journal	September 2019
Proteomics-based Refinement of Deinococcus deserti Genome Annotation Reveals an Unwonted Use of Non-canonical Translation Initiation Codons Baudet, Mathieu; Ortet, Philippe; Gaillard, Jean-Charles Molecular & Cellular Proteomics, Vol. 9, Issue 2 https://doi.org/10.1074/mcp.m900359-mcp200	journal	October 2009
Proteogenomic analysis of pathogenic yeast Cryptococcus neoformans using high resolution mass spectrometry Nagarajha Selvan, Lakshmi Dhevi; Kaviyil, Jyothi Embekkat; Nirujogi, Raja Sekhar Clinical Proteomics, Vol. 11, Issue 1 https://doi.org/10.1186/1559-0275-11-5	journal	February 2014

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