skip to main content
OSTI.GOV title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Complete genome sequence of the sulfate-reducing firmicute Desulfotomaculum ruminis type strain (DLT)

Abstract

Desulfotomaculum ruminis Campbell and Postgate 1965 is a member of the large genus Desulfotomaculum which contains 30 species and is contained in the family Peptococcaceae. This species is of interest because it represents one of the few sulfate- reducing bacteria that have been isolated from the rumen. Here we describe the features of D. ruminis together with the complete genome sequence and annotation. The 3,969,014 bp long chromosome with a total of 3,901 protein-coding and 85 RNA genes is the second completed genome sequence of a type strain of the genus Desulfotomaculum to be pub- lished, and was sequenced as part of the DOE Joint Genome Institute Community Sequencing Program 2009.

Authors:
; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; more »; ; ; ; ; ; ; ; ; « less
Publication Date:
Research Org.:
Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
Sponsoring Org.:
Work for Others (WFO)
OSTI Identifier:
1061576
DOE Contract Number:  
DE-AC05-00OR22725
Resource Type:
Journal Article
Journal Name:
Standards in Genomic Sciences
Additional Journal Information:
Journal Volume: 7; Journal Issue: 2; Journal ID: ISSN 1944-3277
Publisher:
BioMed Central
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES

Citation Formats

Spring, Stefan, Visser, Michael, Lu, Megan, Copeland, Alex, Lapidus, Alla, Lucas, Susan, Cheng, Jan-Fang, Han, Cliff, Tapia, Roxanne, Goodwin, Lynne A., Pitluck, Sam, Ivanova, Natalia, Land, Miriam, Hauser, Loren, Larimer, Frank, Rohde, Manfred, Göker, Markus, Detter, John C., Kyrpides, Nikos C., Woyke, Tanja, Schaap, Peter J., Plugge, Caroline M., Muyzer, Gerard, Kuever, Jan, Pereira, Inês A. C., Parshina, Sofiya N., Bernier-Latmani, Rizlan, Stams, Alfons J. M., and Klenk, Hans-Peter. Complete genome sequence of the sulfate-reducing firmicute Desulfotomaculum ruminis type strain (DLT). United States: N. p., 2012. Web. doi:10.4056/sigs.3226659.
Spring, Stefan, Visser, Michael, Lu, Megan, Copeland, Alex, Lapidus, Alla, Lucas, Susan, Cheng, Jan-Fang, Han, Cliff, Tapia, Roxanne, Goodwin, Lynne A., Pitluck, Sam, Ivanova, Natalia, Land, Miriam, Hauser, Loren, Larimer, Frank, Rohde, Manfred, Göker, Markus, Detter, John C., Kyrpides, Nikos C., Woyke, Tanja, Schaap, Peter J., Plugge, Caroline M., Muyzer, Gerard, Kuever, Jan, Pereira, Inês A. C., Parshina, Sofiya N., Bernier-Latmani, Rizlan, Stams, Alfons J. M., & Klenk, Hans-Peter. Complete genome sequence of the sulfate-reducing firmicute Desulfotomaculum ruminis type strain (DLT). United States. https://doi.org/10.4056/sigs.3226659
Spring, Stefan, Visser, Michael, Lu, Megan, Copeland, Alex, Lapidus, Alla, Lucas, Susan, Cheng, Jan-Fang, Han, Cliff, Tapia, Roxanne, Goodwin, Lynne A., Pitluck, Sam, Ivanova, Natalia, Land, Miriam, Hauser, Loren, Larimer, Frank, Rohde, Manfred, Göker, Markus, Detter, John C., Kyrpides, Nikos C., Woyke, Tanja, Schaap, Peter J., Plugge, Caroline M., Muyzer, Gerard, Kuever, Jan, Pereira, Inês A. C., Parshina, Sofiya N., Bernier-Latmani, Rizlan, Stams, Alfons J. M., and Klenk, Hans-Peter. 2012. "Complete genome sequence of the sulfate-reducing firmicute Desulfotomaculum ruminis type strain (DLT)". United States. https://doi.org/10.4056/sigs.3226659.
@article{osti_1061576,
title = {Complete genome sequence of the sulfate-reducing firmicute Desulfotomaculum ruminis type strain (DLT)},
author = {Spring, Stefan and Visser, Michael and Lu, Megan and Copeland, Alex and Lapidus, Alla and Lucas, Susan and Cheng, Jan-Fang and Han, Cliff and Tapia, Roxanne and Goodwin, Lynne A. and Pitluck, Sam and Ivanova, Natalia and Land, Miriam and Hauser, Loren and Larimer, Frank and Rohde, Manfred and Göker, Markus and Detter, John C. and Kyrpides, Nikos C. and Woyke, Tanja and Schaap, Peter J. and Plugge, Caroline M. and Muyzer, Gerard and Kuever, Jan and Pereira, Inês A. C. and Parshina, Sofiya N. and Bernier-Latmani, Rizlan and Stams, Alfons J. M. and Klenk, Hans-Peter},
abstractNote = {Desulfotomaculum ruminis Campbell and Postgate 1965 is a member of the large genus Desulfotomaculum which contains 30 species and is contained in the family Peptococcaceae. This species is of interest because it represents one of the few sulfate- reducing bacteria that have been isolated from the rumen. Here we describe the features of D. ruminis together with the complete genome sequence and annotation. The 3,969,014 bp long chromosome with a total of 3,901 protein-coding and 85 RNA genes is the second completed genome sequence of a type strain of the genus Desulfotomaculum to be pub- lished, and was sequenced as part of the DOE Joint Genome Institute Community Sequencing Program 2009.},
doi = {10.4056/sigs.3226659},
url = {https://www.osti.gov/biblio/1061576}, journal = {Standards in Genomic Sciences},
issn = {1944-3277},
number = 2,
volume = 7,
place = {United States},
year = {Tue Dec 11 00:00:00 EST 2012},
month = {Tue Dec 11 00:00:00 EST 2012}
}