Description of Rhodanobacter denitrificans sp. nov., isolated from nitrate-rich zones of a contaminated aquifer

Journal Article · Sun Jan 01 00:00:00 EST 2012 · International Journal of Systematic and Evolutionary Microbiology

DOI:https://doi.org/10.1099/ijs.0.035840-0· OSTI ID:1048738

Prakash, Om ^[1]; Green, Stefan ^[1]; Jasrotia, Puja ^[1]; Overholt, Will ^[1]; Canion, Andy ^[1]; Watson, David B ^[2]; Brooks, Scott C ^[2]; Kostka, ^[3]

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1. Florida State University, Tallahassee
2. ORNL
3. Georgia Institute of Technology, Atlanta

Bacterial strains 2APBS1T and 116-2 were isolated from the subsurface of a nuclear legacy waste site where sediments are co-contaminated with large amounts of acidity, nitrate, metal radionuclides and other heavy metals. A combination of physiological and genetic assays indicated that these strains represent the first members of the Rhodanobacter genus shown to be capable of complete denitrification. Cells of strain 2APBS1T and 116-2 were Gram negative, non-spore-forming, rods, 3-5 micro;m long and 0.25-0.5 m in diameter. The isolates were facultative anaerobes, and had temperature and pH optima for growth at 30 C and pH 6.5, respectively, and could tolerate up to 2.0 % NaCl, though growth improved in its absence. Strains 2APBS1T and 116-2 contained fatty acid profiles and 100 % Q-8 ubiquinone, that are characteristic features of the genus Rhodanobacter. Although strains 2APBS1T and 116-2 share high SSU rRNA gene sequence similarity to R. thiooxydans (>99%), DNA-DNA hybridization values were substantially below the 70% threshold used to designate novel species. Thus, based on genotypic, phylogenetic, chemotaxonomic and physiological differences, strains 2APBS1T and 116-2 are considered to represent a novel species of the genus Rhodanobacter, for which the name Rhodanobacter denitrificans sp. nov is proposed. The type strain is 2APBS1T (=DSM 23569T =JCM 17641T). Strain 116-2 (=DSM 24678 = JCM 17642) is a reference strain.

• Research Organization: Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
• Sponsoring Organization: USDOE
• DOE Contract Number: DE-AC05-00OR22725
• OSTI ID: 1048738
• Journal Information: International Journal of Systematic and Evolutionary Microbiology, Vol. 62, Issue 10; ISSN 1466--5026
• Country of Publication: United States
• Language: English