Complete genome sequences for the anaerobic, extremely thermophilic plant biomass-degrading bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensenis, and Caldicellulosiruptor lactoaceticus

Blumer-Schuette, Sara E; Ozdemir, Inci; Mistry, Dhaval; Lucas, Susan; Lapidus, Alla L; Cheng, Jan-Fang; Goodwin, Lynne A; Pitluck, Sam; Land, Miriam L; Hauser, Loren John; Woyke, Tanja; Mikhailova, Natalia; Pati, Amrita; Kyrpides, Nikos C; Ivanova, N; Detter, J Chris; Walston Davenport, Karen; Han, Cliff; Adams, Michael W. W.; Kelly, Robert M

doi:10.1128/JB.01515-10

Title: Complete genome sequences for the anaerobic, extremely thermophilic plant biomass-degrading bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensenis, and Caldicellulosiruptor lactoaceticus

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Abstract

The genus Caldicellulosiruptor contains the most thermophilic, plant biomass-degrading bacteria isolated to date. Previously, genome sequences from three cellulolytic members of this genus were reported (C. saccharolyticus, C. bescii, and C. obsidiansis). To further explore the physiological and biochemical basis for polysaccharide degradation within this genus, five additional genomes were sequenced: C. hydrothermalis, C. kristjanssonii, C. kronotskyensis, C. lactoaceticus, and C. owensensis. Taken together, the seven completed and one draft-phase Caldicellulosiruptor genomes suggest that, while central metabolism is highly conserved, significant differences in glycoside hydrolase inventories and numbers of carbohydrate transporters exist, a finding which likely relates to variability observed in plant biomass degradation capacity.

Authors:

Blumer-Schuette, Sara E ^[1]; Ozdemir, Inci ^[1]; Mistry, Dhaval ^[1]; Lucas, Susan ^[2]; Lapidus, Alla L ^[2]; Cheng, Jan-Fang ^[2]; Goodwin, Lynne A ^[3]; Pitluck, Sam ^[2]; Land, Miriam L ^[4]; Hauser, Loren John ^[4]; Woyke, Tanja ^[2]; Mikhailova, Natalia ^[2]; Pati, Amrita ^[2]; Kyrpides, Nikos C ^[2]; Ivanova, N ^[2]; Detter, J Chris ^[2]; Walston Davenport, Karen ^[3]; Han, Cliff ^[3]; Adams, Michael W. W. ^[5]; Kelly, Robert M ^[1]

North Carolina State University
U.S. Department of Energy, Joint Genome Institute
Los Alamos National Laboratory (LANL)
ORNL
University of Georgia, Athens, GA

Publication Date:: Sat Jan 01 00:00:00 EST 2011

Research Org.:: Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)

Sponsoring Org.:: Work for Others (WFO)

OSTI Identifier:: 1010586

DOE Contract Number:: DE-AC05-00OR22725

Resource Type:: Journal Article

Journal Name:: Journal of Bacteriology

Additional Journal Information:: Journal Volume: 193; Journal Issue: 6; Journal ID: ISSN 0021--9193

Country of Publication:: United States

Language:: English

Subject:: 09 BIOMASS FUELS; BACTERIA; BIOMASS; CAPACITY; CARBOHYDRATES; GLYCOSIDES; HYDROLASES; INVENTORIES; METABOLISM; POLYSACCHARIDES; SP-NOV; ANAEROCELLUM-THERMOPHILUM; CELLULOLYTIC BACTERIUM; SACCHAROLYTICUS; SPRINGS

Citation Formats


                    Blumer-Schuette, Sara E, Ozdemir, Inci, Mistry, Dhaval, Lucas, Susan, Lapidus, Alla L, Cheng, Jan-Fang, Goodwin, Lynne A, Pitluck, Sam, Land, Miriam L, Hauser, Loren John, Woyke, Tanja, Mikhailova, Natalia, Pati, Amrita, Kyrpides, Nikos C, Ivanova, N, Detter, J Chris, Walston Davenport, Karen, Han, Cliff, Adams, Michael W. W., and Kelly, Robert M. Complete genome sequences for the anaerobic, extremely thermophilic plant biomass-degrading bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensenis, and Caldicellulosiruptor lactoaceticus.  United States: N. p., 2011. 
        Web.  doi:10.1128/JB.01515-10.

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                    Blumer-Schuette, Sara E, Ozdemir, Inci, Mistry, Dhaval, Lucas, Susan, Lapidus, Alla L, Cheng, Jan-Fang, Goodwin, Lynne A, Pitluck, Sam, Land, Miriam L, Hauser, Loren John, Woyke, Tanja, Mikhailova, Natalia, Pati, Amrita, Kyrpides, Nikos C, Ivanova, N, Detter, J Chris, Walston Davenport, Karen, Han, Cliff, Adams, Michael W. W., & Kelly, Robert M. Complete genome sequences for the anaerobic, extremely thermophilic plant biomass-degrading bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensenis, and Caldicellulosiruptor lactoaceticus.  United States.  https://doi.org/10.1128/JB.01515-10

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                    Blumer-Schuette, Sara E, Ozdemir, Inci, Mistry, Dhaval, Lucas, Susan, Lapidus, Alla L, Cheng, Jan-Fang, Goodwin, Lynne A, Pitluck, Sam, Land, Miriam L, Hauser, Loren John, Woyke, Tanja, Mikhailova, Natalia, Pati, Amrita, Kyrpides, Nikos C, Ivanova, N, Detter, J Chris, Walston Davenport, Karen, Han, Cliff, Adams, Michael W. W., and Kelly, Robert M. 2011.  
        "Complete genome sequences for the anaerobic, extremely thermophilic plant biomass-degrading bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensenis, and Caldicellulosiruptor lactoaceticus".  United States.  https://doi.org/10.1128/JB.01515-10.

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@article{osti_1010586,

  title        = {Complete genome sequences for the anaerobic, extremely thermophilic plant biomass-degrading bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensenis, and Caldicellulosiruptor lactoaceticus},

  author       = {Blumer-Schuette, Sara E and Ozdemir, Inci and Mistry, Dhaval and Lucas, Susan and Lapidus, Alla L and Cheng, Jan-Fang and Goodwin, Lynne A and Pitluck, Sam and Land, Miriam L and Hauser, Loren John and Woyke, Tanja and Mikhailova, Natalia and Pati, Amrita and Kyrpides, Nikos C and Ivanova, N and Detter, J Chris and Walston Davenport, Karen and Han, Cliff and Adams, Michael W. W. and Kelly, Robert M},

  abstractNote = {The genus Caldicellulosiruptor contains the most thermophilic, plant biomass-degrading bacteria isolated to date. Previously, genome sequences from three cellulolytic members of this genus were reported (C. saccharolyticus, C. bescii, and C. obsidiansis). To further explore the physiological and biochemical basis for polysaccharide degradation within this genus, five additional genomes were sequenced: C. hydrothermalis, C. kristjanssonii, C. kronotskyensis, C. lactoaceticus, and C. owensensis. Taken together, the seven completed and one draft-phase Caldicellulosiruptor genomes suggest that, while central metabolism is highly conserved, significant differences in glycoside hydrolase inventories and numbers of carbohydrate transporters exist, a finding which likely relates to variability observed in plant biomass degradation capacity.},

  doi          = {10.1128/JB.01515-10},

  url          = {https://www.osti.gov/biblio/1010586},
  journal      = {Journal of Bacteriology},

  issn         = {0021--9193},

  number       = 6,

  volume       = 193,

  place        = {United States},

  year         = {Sat Jan 01 00:00:00 EST 2011},

  month        = {Sat Jan 01 00:00:00 EST 2011}

}

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