Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICPT)
Abstract
Acidimicrobium ferrooxidans (Clark and Norris 1996) is the sole and type species of the genus, which until recently was the only genus within the actinobacterial family Acidimicrobiaceae and in the order Acidomicrobiales. Rapid oxidation of iron pyrite during autotrophic growth in the absence of an enhanced CO2 concentration is characteristic for A. ferrooxidans. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the order Acidomicrobiales, and the 2,158,157 bp long single replicon genome with its 2038 protein coding and 54 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.
- Authors:
- more »
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
- Sponsoring Org.:
- Genomics Division
- OSTI Identifier:
- 974552
- Report Number(s):
- LBNL-2778E
- DOE Contract Number:
- DE-AC02-05CH11231
- Resource Type:
- Journal Article
- Journal Name:
- Standards in Genomic Sciences
- Additional Journal Information:
- Journal Name: Standards in Genomic Sciences
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59; Moderate thermophile, ferrous-iron-oxidizing, acidophile, Acidomicrobiales
Citation Formats
Clum, Alicia, Nolan, Matt, Lang, Elke, Glavina Del Rio, Tijana, Tice, Hope, Copeland, Alex, Cheng, Jan-Fang, Lucas, Susan, Chen, Feng, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Ivanova, Natalia, Mavrommatis, Konstantinos, Mikhailova, Natalia, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Goker, Markus, Spring, Stefan, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jefferies, Cynthia C, Chain, Patrick, Bristow, James, Eisen, Jonathan A, Markowitz, Victor, Hugenholtz, Philip, Kyrpides, Nikos C, Klenk, Hans-Peter, and Lapidus, Alla. Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICPT). United States: N. p., 2009.
Web. doi:10.4056/sigs.1463.
Clum, Alicia, Nolan, Matt, Lang, Elke, Glavina Del Rio, Tijana, Tice, Hope, Copeland, Alex, Cheng, Jan-Fang, Lucas, Susan, Chen, Feng, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Ivanova, Natalia, Mavrommatis, Konstantinos, Mikhailova, Natalia, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Goker, Markus, Spring, Stefan, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jefferies, Cynthia C, Chain, Patrick, Bristow, James, Eisen, Jonathan A, Markowitz, Victor, Hugenholtz, Philip, Kyrpides, Nikos C, Klenk, Hans-Peter, & Lapidus, Alla. Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICPT). United States. https://doi.org/10.4056/sigs.1463
Clum, Alicia, Nolan, Matt, Lang, Elke, Glavina Del Rio, Tijana, Tice, Hope, Copeland, Alex, Cheng, Jan-Fang, Lucas, Susan, Chen, Feng, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Ivanova, Natalia, Mavrommatis, Konstantinos, Mikhailova, Natalia, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Goker, Markus, Spring, Stefan, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jefferies, Cynthia C, Chain, Patrick, Bristow, James, Eisen, Jonathan A, Markowitz, Victor, Hugenholtz, Philip, Kyrpides, Nikos C, Klenk, Hans-Peter, and Lapidus, Alla. 2009.
"Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICPT)". United States. https://doi.org/10.4056/sigs.1463. https://www.osti.gov/servlets/purl/974552.
@article{osti_974552,
title = {Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICPT)},
author = {Clum, Alicia and Nolan, Matt and Lang, Elke and Glavina Del Rio, Tijana and Tice, Hope and Copeland, Alex and Cheng, Jan-Fang and Lucas, Susan and Chen, Feng and Bruce, David and Goodwin, Lynne and Pitluck, Sam and Ivanova, Natalia and Mavrommatis, Konstantinos and Mikhailova, Natalia and Pati, Amrita and Chen, Amy and Palaniappan, Krishna and Goker, Markus and Spring, Stefan and Land, Miriam and Hauser, Loren and Chang, Yun-Juan and Jefferies, Cynthia C and Chain, Patrick and Bristow, James and Eisen, Jonathan A and Markowitz, Victor and Hugenholtz, Philip and Kyrpides, Nikos C and Klenk, Hans-Peter and Lapidus, Alla},
abstractNote = {Acidimicrobium ferrooxidans (Clark and Norris 1996) is the sole and type species of the genus, which until recently was the only genus within the actinobacterial family Acidimicrobiaceae and in the order Acidomicrobiales. Rapid oxidation of iron pyrite during autotrophic growth in the absence of an enhanced CO2 concentration is characteristic for A. ferrooxidans. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the order Acidomicrobiales, and the 2,158,157 bp long single replicon genome with its 2038 protein coding and 54 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.},
doi = {10.4056/sigs.1463},
url = {https://www.osti.gov/biblio/974552},
journal = {Standards in Genomic Sciences},
number = ,
volume = ,
place = {United States},
year = {Wed May 20 00:00:00 EDT 2009},
month = {Wed May 20 00:00:00 EDT 2009}
}
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