The DOE-JGI Standard Operating Procedure for the Annotations of the Microbial Genomes
Journal Article
·
· Standards in Genomic Sciences
The DOE-JGI Microbial Annotation Pipeline (DOE-JGI MAP) supports gene prediction and/or functional annotation of microbial genomes towards comparative analysis with the Integrated Microbial Genome (IMG) system. DOE-JGI MAP annotation is applied on nucleotide sequence datasets included in the IMG-ER (Expert Review) version of IMG via the IMG ER submission site. Users can submit the sequence datasets consisting of one or more contigs in a multi-fasta file. DOE-JGI MAP annotation includes prediction of protein coding and RNA genes, as well as repeats and assignment of product names to these genes.
- Research Organization:
- Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
- Sponsoring Organization:
- Computational Research Division; Genomics Division
- DOE Contract Number:
- DE-AC02-05CH11231
- OSTI ID:
- 974530
- Report Number(s):
- LBNL-2754E; TRN: US201007%%780
- Journal Information:
- Standards in Genomic Sciences, Vol. 1; Related Information: Journal Publication Date: 2009
- Country of Publication:
- United States
- Language:
- English
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