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Title: Root bacterial endophytes alter plant phenotype, but not physiology

Journal Article · · PeerJ
DOI:https://doi.org/10.7717/peerj.2606· OSTI ID:1356906
 [1];  [2];  [2]; ORCiD logo [1];  [2];  [3]
  1. Univ. of Tennessee, Knoxville, TN (United States)
  2. Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
  3. Univ. of Tennessee, Knoxville, TN (United States); Univ. of Copenhagen, Copenhagen (Denmark)

Plant traits, such as root and leaf area, influence how plants interact with their environment and the diverse microbiota living within plants can influence plant morphology and physiology. Here, we explored how three bacterial strains isolated from thePopulusroot microbiome, influenced plant phenotype. We chose three bacterial strains that differed in predicted metabolic capabilities, plant hormone production and metabolism, and secondary metabolite synthesis. We inoculated each bacterial strain on a single genotype ofPopulus trichocarpaand measured the response of plant growth related traits (root:shoot, biomass production, root and leaf growth rates) and physiological traits (chlorophyll content, net photosynthesis, net photosynthesis at saturating light–Asat, and saturating CO2–Amax). Overall, we found that bacterial root endophyte infection increased root growth rate up to 184% and leaf growth rate up to 137% relative to non-inoculated control plants, evidence that plants respond to bacteria by modifying morphology. However, endophyte inoculation had no influence on total plant biomass and photosynthetic traits (net photosynthesis, chlorophyll content). In sum, bacterial inoculation did not significantly increase plant carbon fixation and biomass, but their presence altered where and how carbon was being allocated in the plant host.

Research Organization:
Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
Grant/Contract Number:
AC05-00OR22725; SC0010562
OSTI ID:
1356906
Alternate ID(s):
OSTI ID: 1394451; OSTI ID: 1501387
Journal Information:
PeerJ, Vol. 4; ISSN 2167-8359
Publisher:
PeerJ Inc.Copyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 27 works
Citation information provided by
Web of Science

References (61)

The Transcriptome of Rhizobacteria-Induced Systemic Resistance in Arabidopsis journal August 2004
Distinct Microbial Communities within the Endosphere and Rhizosphere of Populus deltoides Roots across Contrasting Soil Types journal July 2011
Plant-Growth-Promoting Rhizobacteria journal October 2009
Phenotypic plasticity for plant development, function and life history journal December 2000
Microarray Analysis of the Gene Expression Profile Induced by the Endophytic Plant Growth-Promoting Rhizobacteria, Pseudomonas fluorescens FPT9601-T5 in Arabidopsis journal May 2005
A diazotrophic, indole-3-acetic acid-producing endophyte from wild cottonwood journal April 2009
Host plant secondary metabolite profiling shows a complex, strain-dependent response of maize to plant growth-promoting rhizobacteria of the genus Azospirillum journal October 2010
Two Poplar-Associated Bacterial Isolates Induce Additive Favorable Responses in a Constructed Plant-Microbiome System journal April 2016
Micropropagation of Populus trichocarpa ‘Nisqually-1’: the genotype deriving the Populus reference genome journal September 2009
Rapid responses of soil microorganisms improve plant fitness in novel environments journal August 2012
The Evolution of Phenotypic Plasticity in Plants journal November 1986
Understanding the molecular basis of plant growth promotional effect of Pseudomonas fluorescens on rice through protein profiling journal January 2009
Salicylic Acid Biosynthesis and Metabolism journal January 2011
Pseudomonas fluorescens Induces Strain-Dependent and Strain-Independent Host Plant Responses in Defense Networks, Primary Metabolism, Photosynthesis, and Fitness journal June 2012
Vive la différence: plant functional diversity matters to ecosystem processes journal November 2001
Rhizosphere bacteria help plants tolerate abiotic stress journal January 2009
The worldwide leaf economics spectrum journal April 2004
Biosynthesis of salicylic acid in plants journal June 2009
Biological nitrogen fixation and biomass accumulation within poplar clones as a result of inoculations with diazotrophic endophyte consortia journal October 2013
Unraveling Root Developmental Programs Initiated by Beneficial Pseudomonas spp. Bacteria journal March 2013
Ethylene Biosynthesis and its Regulation in Higher Plants journal June 1984
The importance of the microbiome of the plant holobiont journal February 2015
Fitting Linear Mixed-Effects Models Using lme4 journal January 2015
Uncoupling Auxin and Ethylene Effects in Transgenic Tobacco and Arabidopsis Plants. journal February 1993
Plant root transcriptome profiling reveals a strain-dependent response during Azospirillum-rice cooperation journal November 2014
Twenty-One Genome Sequences from Pseudomonas Species and 19 Genome Sequences from Diverse Bacteria Isolated from the Rhizosphere and Endosphere of Populus deltoides journal October 2012
The world-wide ‘fast-slow’ plant economics spectrum: a traits manifesto journal February 2014
Generality of leaf Trait Relationships: a test Across six Biomes journal September 1999
Endophytic bacterial diversity in poplar trees growing on a BTEX-contaminated site: The characterisation of isolates with potential to enhance phytoremediation journal November 2006
A handbook of protocols for standardised and easy measurement of plant functional traits worldwide journal January 2003
Diversity of Pseudomonas Genomes, Including Populus-Associated Isolates, as Revealed by Comparative Genome Analysis journal October 2015
Microbially Mediated Plant Functional Traits journal December 2011
A Revised Medium for Rapid Growth and Bio Assays with Tobacco Tissue Cultures journal July 1962
Newly identified helper bacteria stimulate ectomycorrhizal formation in Populus journal October 2014
Degradation, Phytoprotection and Phytoremediation of Phenanthrene by Endophyte Pseudomonas putida, PD1 journal October 2014
Metabolic functions of Pseudomonas fluorescens strains from Populus deltoides depend on rhizosphere or endosphere isolation compartment journal October 2015
Carbon Economy of Soybean-Rhizobium-Glomus Associations journal November 1985
Evaluation and validation of de novo and hybrid assembly techniques to derive high-quality genome sequences journal June 2014
Azospirillum -plant relationships: physiological, molecular, agricultural, and environmental advances (1997-2003) journal August 2004
Evolutionary ecology of plant-microbe interactions: soil microbial structure alters selection on plant traits journal June 2011
Genotype-by-Environment Interaction and Plasticity: Exploring Genomic Responses of Plants to the Abiotic Environment journal November 2013
Enhanced plant growth by siderophores produced by plant growth-promoting rhizobacteria journal August 1980
Plant-rhizobacteria interactions alleviate abiotic stress conditions: Plant-rhizobacteria interactions journal August 2009
Plant Species, Host Age and Host Genotype Effects on Meloidogyne incognita Biocontrol by Pseudomonas fluorescens Strain CHA0 and its Genetically-Modified Derivatives: Plant Species, Age and Genotype Effects on Pseudomonads journal April 2003
Towards a holistic understanding of the beneficial interactions across the Populus microbiome journal November 2014
H OST V ARIATION FOR I NTERACTIONS WITH B ENEFICIAL P LANT -A SSOCIATED M ICROBES journal September 1999
Direct and indirect effects of climate change on soil microbial and soil microbial-plant interactions: What lies ahead? journal August 2015
Greater than the sum of their parts: characterizing plant microbiomes at the community-level journal April 2015
Natural soil microbes alter flowering phenology and the intensity of selection on flowering time in a wild Arabidopsis relative journal April 2014
Auxin promotes Arabidopsis root growth by modulating gibberellin response journal February 2003
The Evolution of Phenotypic Plasticity in Plants journal January 1986
Uncoupling Auxin and Ethylene Effects in Transgenic Tobacco and Arabidopsis Plants journal February 1993
Fitting Linear Mixed-Effects Models Using lme4 text January 2015
Natural soil microbes alter flowering phenology and the intensity of selection on flowering time in a wild Arabidopsis relative
  • S., Lundberg, Derek; Thomas, Mitchell-Olds,; G., Tringe, Susannah
  • The University of North Carolina at Chapel Hill University Libraries https://doi.org/10.17615/xdb1-mm42
text January 2014
Fitting Linear Mixed-Effects Models using lme4 preprint January 2014
Interaction between alfalfa cultivars and Rhizobium strains for nitrogen Fixation journal February 1986
Jasmonate-signalled plant gene expression journal August 1997
An exopolysaccharide-producing novel Agrobacterium pusense strain JAS1 isolated from snake plant enhances plant growth and soil water retention journal December 2022
Effects of Bacterial ACC Deaminase on Brassica napus Gene Expression journal May 2012
Expression Profiling Soybean Response to Pseudomonas syringae Reveals New Defense-Related Genes and Rapid HR-Specific Downregulation of Photosynthesis journal November 2005
Microvascular Function Is Impaired after Short-Term Immobilization in Healthy Men journal October 2020

Cited By (8)

Quantifying the Spatiotemporal Dynamics of Plant Root Colonization by Beneficial Bacteria in a Microfluidic Habitat journal April 2018
Relatively rare root endophytic bacteria drive plant resource allocation patterns and tissue nutrient concentration in unpredictable ways journal October 2019
The soil microbial community alters patterns of selection on flowering time and fitness‐related traits in Ipomoea purpurea journal January 2020
Soil microbes that may accompany climate warming increase alpine plant production journal October 2019
The Populus holobiont: dissecting the effects of plant niches and genotype on the microbiome journal February 2018
Back to the Origin: In Situ Studies Are Needed to Understand Selection during Crop Diversification journal October 2017
16S rRNA metagenomic analysis of the bacterial community associated with turf grass seeds from low moisture and high moisture climates journal January 2020
Tuber indicum shapes the microbial communities of ectomycorhizosphere soil and ectomycorrhizae of an indigenous tree (Pinus armandii) journal April 2017