Automatic Tool for Local Assembly Structures
Software
·
OSTI ID:1328675
Whole community shotgun sequencing of total DNA (i.e. metagenomics) and total RNA (i.e. metatranscriptomics) has provided a wealth of information in the microbial community structure, predicted functions, metabolic networks, and is even able to reconstruct complete genomes directly. Here we present ATLAS (Automatic Tool for Local Assembly Structures) a comprehensive pipeline for assembly, annotation, genomic binning of metagenomic and metatranscriptomic data with an integrated framework for Multi-Omics. This will provide an open source tool for the Multi-Omic community at large.
- Short Name / Acronym:
- ATLAS; 004969MLTPL00
- Project Type:
- Several open source programs combined.
- Site Accession Number:
- Battelle IPID 30997-E
- Version:
- 00
- Programming Language(s):
- Medium: X; OS: Pyton
- Research Organization:
- Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)
- Sponsoring Organization:
- USDOE
- Contributing Organization:
- Battelle Memorial Institute, Pacific Northwest Division (PNNL)
- DOE Contract Number:
- AC05-76RL01830
- OSTI ID:
- 1328675
- Country of Origin:
- United States
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