skip to main content
OSTI.GOV title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Quantifying the influences of spectral resolution on uncertainty in leaf trait estimates through a Bayesian approach to RTM inversion

Journal Article · · Remote Sensing of Environment
ORCiD logo [1];  [1];  [2];  [3];  [2]
  1. Boston Univ., Boston, MA (United States)
  2. Brookhaven National Lab. (BNL), Upton, NY (United States); Stony Brook Univ., Stony Brook, NY (United States)
  3. Univ. of Wisconsin-Madison, Madison, WI (United States)

The remote monitoring of plant canopies is critically needed for understanding of terrestrial ecosystem mechanics and biodiversity as well as capturing the short- to long-term responses of vegetation to disturbance and climate change. A variety of orbital, sub-orbital, and field instruments have been used to retrieve optical spectral signals and to study different vegetation properties such as plant biochemistry, nutrient cycling, physiology, water status, and stress. Radiative transfer models (RTMs) provide a mechanistic link between vegetation properties and observed spectral features, and RTM spectral inversion is a useful framework for estimating these properties from spectral data. However, existing approaches to RTM spectral inversion are typically limited by the inability to characterize uncertainty in parameter estimates. Here, we introduce a Bayesian algorithm for the spectral inversion of the PROSPECT 5 leaf RTM that is distinct from past approaches in two important ways: First, the algorithm only uses reflectance and does not require transmittance observations, which have been plagued by a variety of measurement and equipment challenges. Second, the output is not a point estimate for each parameter but rather the joint probability distribution that includes estimates of parameter uncertainties and covariance structure. We validated our inversion approach using a database of leaf spectra together with measurements of equivalent water thickness (EWT) and leaf dry mass per unit area (LMA). The parameters estimated by our inversion were able to accurately reproduce the observed reflectance (RMSEVIS = 0.0063, RMSENIR-SWIR = 0.0098) and transmittance (RMSEVIS = 0.0404, RMSENIR-SWIR = 0.0551) for both broadleaved and conifer species. Inversion estimates of EWT and LMA for broadleaved species agreed well with direct measurements (CVEWT = 18.8%, CVLMA = 24.5%), while estimates for conifer species were less accurate (CVEWT = 53.2%, CVLMA = 63.3%). To examine the influence of spectral resolution on parameter uncertainty, we simulated leaf reflectance as observed by ten common remote sensing platforms with varying spectral configurations and performed a Bayesian inversion on the resulting spectra. We found that full-range hyperspectral platforms were able to retrieve all parameters accurately and precisely, while the parameter estimates of multispectral platforms were much less precise and prone to bias at high and low values. We also observed that variations in the width and location of spectral bands influenced the shape of the covariance structure of parameter estimates. Lastly, our Bayesian spectral inversion provides a powerful and versatile framework for future RTM development and single- and multi-instrumental remote sensing of vegetation.

Research Organization:
Brookhaven National Laboratory (BNL), Upton, NY (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
Grant/Contract Number:
SC00112704
OSTI ID:
1326737
Report Number(s):
BNL-112627-2016-JA; R&D Project: 21087; YN0100000
Journal Information:
Remote Sensing of Environment, Vol. 183, Issue C; ISSN 0034-4257
Publisher:
ElsevierCopyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 48 works
Citation information provided by
Web of Science

References (70)

Interaction of Isotropic Light with a Compact Plant Leaf* journal January 1969
Quantifying forest canopy traits: Imaging spectroscopy versus field survey journal March 2015
Spatially constrained inversion of radiative transfer models for improved LAI mapping from future Sentinel-2 imagery journal May 2012
Utility of the Wavelet Transform for LAI Estimation Using Hyperspectral Data journal July 2013
Hyperspectral remote sensing of plant pigments journal November 2006
Retrieval of chlorophyll concentration from leaf reflectance spectra using wavelet analysis journal April 2008
Continuous wavelet analysis for the detection of green attack damage due to mountain pine beetle infestation journal April 2010
Deriving leaf mass per area (LMA) from foliar reflectance across a variety of plant species using continuous wavelet analysis journal January 2014
Retrieval of canopy biophysical variables from bidirectional reflectance journal January 2003
Spectroscopic sensitivity of real-time, rapidly induced phytochemical change in response to damage journal February 2013
Accounting for uncertainty in ecological analysis: the strengths and limitations of hierarchical statistical modeling journal April 2009
Modelling leaf chlorophyll content in broadleaf and needle leaf canopies from ground, CASI, Landsat TM 5 and MERIS reflectance data journal June 2013
The applicability of empirical vegetation indices for determining leaf chlorophyll content over different leaf and canopy structures journal March 2014
LIBERTY—Modeling the Effects of Leaf Biochemical Concentration on Reflectance Spectra journal July 1998
Relationship of a Landsat cumulative disturbance index to canopy nitrogen and forest structure journal March 2012
Enhancing a leaf radiative transfer model to estimate concentrations and in vivo specific absorption coefficients of total carotenoids and chlorophylls a and b from single-needle reflectance and transmittance journal September 2009
Pigment-based Identification of Ozone-Damaged Pine Needles as a Basis for Spectral Segregation of Needle Conditions journal May 2009
Spectral identification of ozone‐damaged pine needles journal June 2009
Tree mortality in the eastern and central United States: patterns and drivers journal July 2011
On improving the communication between models and data: Communication between models and data journal January 2013
Non-destructive estimation of foliar carotenoid content of tree species using merged vegetation indices journal March 2015
PROSPECT-4 and 5: Advances in the leaf optical properties model separating photosynthetic pigments journal June 2008
Optimizing spectral indices and chemometric analysis of leaf chemical properties using radiative transfer modeling journal October 2011
Analyzing the spectral variability of tropical tree species using hyperspectral feature selection and leaf optical modeling journal January 2013
Leaf optical properties with explicit description of its biochemical composition: Direct and inverse problems journal May 1996
Leafmod journal February 1998
Inference from Iterative Simulation Using Multiple Sequences journal November 1992
Diffuse and specular characteristics of leaf reflectance journal July 1987
An Adaptive Metropolis Algorithm journal April 2001
Integrated narrow-band vegetation indices for prediction of crop chlorophyll content for application to precision agriculture journal August 2002
Quantification of global gross forest cover loss journal April 2010
Advances in remote sensing of vegetation function and traits journal December 2015
PROSPECT: A model of leaf optical properties spectra journal November 1990
Extraction of vegetation biophysical parameters by inversion of the PROSPECT + SAIL models on sugar beet canopy reflectance data. Application to TM and AVIRIS sensors journal June 1995
PROSPECT+SAIL models: A review of use for vegetation characterization journal September 2009
Hyperspectral remote sensing of foliar nitrogen content journal December 2012
Modeling energy and carbon fluxes in a heterogeneous oak woodland: A three-dimensional approach journal January 2012
A two-layer canopy reflectance model journal October 2001
Bayesian object-based estimation of LAI and chlorophyll from a simulated Sentinel-2 top-of-atmosphere radiance image journal January 2014
Multitemporal-patch ensemble inversion of coupled surface–atmosphere radiative transfer models for land surface characterization journal March 2008
Towards universal broad leaf chlorophyll indices using PROSPECT simulated database and hyperspectral reflectance measurements journal January 2004
Facilitating feedbacks between field measurements and ecosystem models journal May 2013
Examining spectral reflectance features related to foliar nitrogen in forests: Implications for broad-scale nitrogen mapping journal February 2016
Evaluation of the performance of various vegetation indices to retrieve vegetation cover from AVHRR data journal October 1994
Retrieval of Leaf Biochemical Parameters Using PROSPECT Inversion: A New Approach for Alleviating Ill-Posed Problems journal July 2011
Retrieval of chlorophyll for assimilating branches of a typical desert plant through inversed radiative transfer models journal December 2012
Assessment of vegetation indices for regional crop green LAI estimation from Landsat images over multiple growing seasons journal August 2012
Development of a global land cover characteristics database and IGBP DISCover from 1 km AVHRR data journal January 2000
Applicability of the PROSPECT model for Norway spruce needles journal December 2006
Estimating chlorophyll concentration in conifer needles with hyperspectral data: An assessment at the needle and canopy level journal June 2008
Multi-temporal, multi-sensor retrieval of terrestrial vegetation properties from spectral–directional radiometric data journal March 2015
A clumped-foliage canopy radiative transfer model for a global dynamic terrestrial ecosystem model. I: Theory journal July 2010
Causes and consequences of variation in leaf mass per area (LMA): a meta‐analysis journal April 2009
Assimilating canopy reflectance data into an ecosystem model with an Ensemble Kalman Filter journal April 2008
Leaf optical properties reflect variation in photosynthetic metabolism and its sensitivity to temperature journal October 2011
Foliar nitrogen in relation to plant traits and reflectance properties of New Hampshire forests journal January 2013
Light scattering by leaf layers with application to canopy reflectance modeling: The SAIL model journal October 1984
Canopy vertical heterogeneity plays a critical role in reflectance simulation journal February 2013
Applicability of the PROSPECT model for estimating protein and cellulose + lignin in fresh leaves journal October 2015
Limits to detectability of land degradation by trend analysis of vegetation index data journal October 2012
The worldwide leaf economics spectrum journal April 2004
LAI retrieval and uncertainty evaluations for typical row-planted crops at different growth stages journal January 2008
Needle chlorophyll content estimation through model inversion using hyperspectral data from boreal conifer forest canopies journal January 2004
Estimating leaf carotenoid content in vineyards using high resolution hyperspectral imagery acquired from an unmanned aerial vehicle (UAV) journal April 2013
Estimating light absorption by chlorophyll, leaf and canopy in a deciduous broadleaf forest using MODIS data and a radiative transfer model journal November 2005
Characterization of seasonal variation of forest canopy in a temperate deciduous broadleaf forest, using daily MODIS data journal December 2006
Can a satellite-derived estimate of the fraction of PAR absorbed by chlorophyll (FAPARchl) improve predictions of light-use efficiency and ecosystem photosynthesis for a boreal aspen forest? journal April 2009
Using EO-1 Hyperion to Simulate HyspIRI Products for a Coniferous Forest: The Fraction of PAR Absorbed by Chlorophyll $(\hbox{fAPAR}_{\rm chl})$ and Leaf Water Content (LWC) journal May 2012
Estimating leaf area index from MODIS and surface meteorological data using a dynamic Bayesian network journal December 2012
Early detection of crop injury from herbicide glyphosate by leaf biochemical parameter inversion journal September 2014

Cited By (13)

Terrestrial biosphere models may overestimate Arctic CO 2 assimilation if they do not account for decreased quantum yield and convexity at low temperature journal March 2019
Quantifying Vegetation Biophysical Variables from Imaging Spectroscopy Data: A Review on Retrieval Methods journal June 2018
Mapping within-field leaf chlorophyll content in agricultural crops for nitrogen management using Landsat-8 imagery journal November 2019
Leaf to canopy upscaling approach affects the estimation of canopy traits journal October 2018
The influence of canopy radiation parameter uncertainty on model projections of terrestrial carbon and energy cycling journal April 2019
Vegetation demographics in Earth System Models: A review of progress and priorities journal October 2017
From the Arctic to the tropics: multibiome prediction of leaf mass per area using leaf reflectance journal September 2019
Estimation of leaf traits from reflectance measurements: comparison between methods based on vegetation indices and several versions of the PROSPECT model journal March 2018
Retrieval of leaf water content from remotely sensed data using a vegetation index model constructed with shortwave infrared reflectances journal April 2018
A roadmap for improving the representation of photosynthesis in Earth system models journal November 2016
Machine learning and artificial intelligence to aid climate change research and preparedness journal November 2019
The influence of canopy radiation parameter uncertainty on model projections of terrestrial carbon and energy cycling journal July 2019
Quantifying vegetation biophysical variables from imaging spectroscopy data: a review on retrieval methods text January 2020

Figures / Tables (11)