Genome sequence of the pink–pigmented marine bacterium Loktanella hongkongensis type strain (UST950701–009PT), a representative of the Roseobacter group

Lau, Stanley CK; Riedel, Thomas; Fiebig, Anne; Han, James; Huntemann, Marcel; Petersen, Jörn; Ivanova, Natalia N.; Markowitz, Victor; Woyke, Tanja; Göker, Markus; Kyrpides, Nikos C.; Klenk, Hans-Peter; Qian, Pei-Yuan

doi:10.1186/s40793-015-0050-9

Title: Genome sequence of the pink–pigmented marine bacterium Loktanella hongkongensis type strain (UST950701–009PT), a representative of the Roseobacter group

Journal Article · Tue Aug 11 00:00:00 EDT 2015 · Standards in Genomic Sciences

DOI:https://doi.org/10.1186/s40793-015-0050-9· OSTI ID:1256933

Lau, Stanley CK ^[1]; Riedel, Thomas ^[2]; Fiebig, Anne ^[3]; Han, James ^[4]; Huntemann, Marcel ^[4]; Petersen, Jörn ^[2]; Ivanova, Natalia N. ^[4]; Markowitz, Victor ^[5]; Woyke, Tanja ^[4]; Göker, Markus ^[2]; Kyrpides, Nikos C. ^[4]; Klenk, Hans-Peter ^[2]; Qian, Pei-Yuan ^[1]

Hong Kong Univ. of Science and Technology (People's Republic of China)
Leibniz Inst. DSMZ, Braunschweig (Germany)
Helmholtz Centre for Infection Research, Braunschweig (Germany)
DOE Joint Genome Institute, Walnut Creek, CA (United States)
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)

Loktanella hongkongensis UST950701-009PT is a Gram-negative, non-motile and rod-shaped bacterium isolated from a marine biofilm in the subtropical seawater of Hong Kong. When growing as a monospecies biofilm on polystyrene surfaces, this bacterium is able to induce larval settlement and metamorphosis of a ubiquitous polychaete tubeworm Hydroides elegans. The inductive cues are low-molecular weight compounds bound to the exopolymeric matrix of the bacterial cells. In the present study we describe the features of L. hongkongensis strain DSM 17492T together with its genome sequence and annotation and novel aspects of its phenotype. The 3,198,444 bp long genome sequence encodes 3104 protein-coding genes and 57 RNA genes. Lastly, the two unambiguously identified extrachromosomal replicons contain replication modules of the RepB and the Rhodobacteraceae-specific DnaA-like type, respectively.

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Research Organization:: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: USDOE

OSTI ID:: 1256933

Journal Information:: Standards in Genomic Sciences, Vol. 10, Issue 1; ISSN 1944-3277

Publisher:: BioMed CentralCopyright Statement

Country of Publication:: United States

Language:: English

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Title: Genome sequence of the pink–pigmented marine bacterium Loktanella hongkongensis type strain (UST950701–009PT), a representative of the Roseobacter group

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