Groundwater–surface water mixing shifts ecological assembly processes and stimulates organic carbon turnover

Stegen, James C.; Fredrickson, James K.; Wilkins, Michael J.; Konopka, Allan E.; Nelson, William C.; Arntzen, Evan V.; Chrisler, William B.; Chu, Rosalie K.; Danczak, Robert E.; Fansler, Sarah J.; Kennedy, David W.; Resch, Charles T.; Tfaily, Malak

doi:10.1038/ncomms11237

Title: Groundwater–surface water mixing shifts ecological assembly processes and stimulates organic carbon turnover

Journal Article · Thu Apr 07 00:00:00 EDT 2016 · Nature Communications

DOI:https://doi.org/10.1038/ncomms11237· OSTI ID:1253864

Stegen, James C. ^[1]; Fredrickson, James K. ^[1]; Wilkins, Michael J. ^[2]; Konopka, Allan E. ^[1]; Nelson, William C. ^[1]; Arntzen, Evan V. ^[1]; Chrisler, William B. ^[1]; Chu, Rosalie K. ^[1]; Danczak, Robert E. ^[2]; Fansler, Sarah J. ^[1]; Kennedy, David W. ^[1]; Resch, Charles T. ^[1]; Tfaily, Malak ^[1]

Pacific Northwest National Lab. (PNNL), Richland, WA (United States)
The Ohio State Univ., Columbus, OH (United States)

Environmental transition zones are associated with geochemical gradients that overcome energy limitations to microbial metabolism, resulting in biogeochemical hot spots and moments. Riverine systems where groundwater mixes with surface water (the hyporheic zone) are spatially complex and temporally dynamic, making development of predictive models challenging. Spatial and temporal variations in hyporheic zone microbial communities are a key, but understudied, component of riverine biogeochemical function. To investigate the coupling among groundwater-surface water mixing, microbial communities, and biogeochemistry we applied ecological theory, aqueous biogeochemistry, DNA sequencing, and ultra-high resolution organic carbon profiling to field samples collected across times and locations representing a broad range of mixing conditions. Mixing of groundwater and surface water resulted in a shift from transport-driven stochastic dynamics to a deterministic microbial structure associated with elevated biogeochemical rates. While the dynamics of the hyporheic make predictive modeling a challenge, we provide new knowledge that can improve the tractability of such models.

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Research Organization:: Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)

Sponsoring Organization:: USDOE

Grant/Contract Number:: AC05-76RL01830

OSTI ID:: 1253864

Report Number(s):: PNNL-SA-111962; ncomms11237

Journal Information:: Nature Communications, Vol. 7; ISSN 2041-1723

Publisher:: Nature Publishing GroupCopyright Statement

Country of Publication:: United States

Language:: English

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Cited by: 236 works

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Selection imposed by local environmental conditions drives differences in microbial community composition across geographically distinct groundwater aquifers Fillinger, Lucas; Hug, Katrin; Griebler, Christian FEMS Microbiology Ecology, Vol. 95, Issue 11 https://doi.org/10.1093/femsec/fiz160	journal	October 2019
Assessing the effect of flood restoration on surface-subsurface interactions in Rohrschollen Island (Upper Rhine River – France) using integrated hydrological modeling and thermal infrared imaging Jeannot, Bemjamin; Weill, Sylvain; Eschbach, David Hydrology and Earth systems Sciences Discussions https://doi.org/10.5194/hess-2018-439	journal	September 2018
Seasonal Mixing-Driven System in Estuarine–Coastal Zone Triggers an Ecological Shift in Bacterial Assemblages Involved in Phytoplankton-Derived DMSP Degradation Han, Dukki; Kang, Hee Yoon; Kang, Chang-Keun Microbial Ecology, Vol. 79, Issue 1 https://doi.org/10.1007/s00248-019-01392-w	journal	May 2019
The chemodiversity of paddy soil dissolved organic matter correlates with microbial community at continental scales Li, Hong-Yi; Wang, Hang; Wang, Hai-Tiao Microbiome, Vol. 6, Issue 1 https://doi.org/10.1186/s40168-018-0561-x	journal	October 2018
Key role of streambed moisture and flash storms for microbial resistance and resilience to long‐term drought Gionchetta, Giulia; Oliva, Francesc; Menéndez, Margarita Freshwater Biology https://doi.org/10.1111/fwb.13218	journal	December 2018
Assessment of Microbial Community Dynamics in River Bank Filtrate Using High-Throughput Sequencing and Flow Cytometry Fiedler, Christina J.; Schönher, Christoph; Proksch, Philipp Frontiers in Microbiology, Vol. 9 https://doi.org/10.3389/fmicb.2018.02887	journal	November 2018
Hydrological pulses and burning of dissolved organic carbon by stream respiration: Hydrological pulses and stream respiration Demars, Benoît O. L. Limnology and Oceanography, Vol. 64, Issue 1 https://doi.org/10.1002/lno.11048	journal	October 2018
Deterministic influences exceed dispersal effects on hydrologically-connected microbiomes: Deterministic assembly of hyporheic microbiomes Graham, Emily B.; Crump, Alex R.; Resch, Charles T. Environmental Microbiology, Vol. 19, Issue 4 https://doi.org/10.1111/1462-2920.13720	journal	March 2017
The effect of unsteady streamflow and stream-groundwater interactions on oxygen consumption in a sandy streambed Galloway, Jason; Fox, Aryeh; Lewandowski, Jörg Scientific Reports, Vol. 9, Issue 1 https://doi.org/10.1038/s41598-019-56289-y	journal	December 2019
Evidence for Microbial Mediated NO3− Cycling Within Floodplain Sediments During Groundwater Fluctuations Bouskill, Nicholas J.; Conrad, Mark E.; Bill, Markus Frontiers in Earth Science, Vol. 7 https://doi.org/10.3389/feart.2019.00189	journal	July 2019
Profiling the microbial community structure and functional diversity of a dam-regulated river undergoing gravel bar restoration Serrana, Joeselle M.; Li, Bin; Sumi, Tetsuya Freshwater Biology https://doi.org/10.1101/2020.01.25.919381	journal	January 2020
Two key features influencing community assembly processes at regional scale: Initial state and degree of change in environmental conditions Feng, Youzhi; Chen, Ruirui; Stegen, James C. Molecular Ecology, Vol. 27, Issue 24 https://doi.org/10.1111/mec.14914	journal	November 2018
In-situ microbial colonization and its potential contribution on biofilm formation in subsurface sediments Lee, Ji-Hoon; Lee, Bong-Joo; Yun, Uk Journal of Applied Biological Chemistry, Vol. 62, Issue 1 https://doi.org/10.3839/jabc.2019.008	journal	March 2019
Oligotrophic wetland sediments susceptible to shifts in microbiomes and mercury cycling with dissolved organic matter addition Graham, Emily B.; Gabor, Rachel S.; Schooler, Shon PeerJ, Vol. 6 https://doi.org/10.7717/peerj.4575	journal	January 2018
Dynamic changes in dissolved organic matter composition in a Mountain Lake under ice cover and relationships to changes in nutrient cycling and phytoplankton community composition Rue, Garrett P.; Darling, Joshua P.; Graham, Emily Aquatic Sciences, Vol. 82, Issue 1 https://doi.org/10.1007/s00027-019-0687-3	journal	December 2019
Profiling the microbial community structure and functional diversity of a dam‐regulated river undergoing gravel bar restoration Serrana, Joeselle M.; Li, Bin; Sumi, Tetsuya Freshwater Biology, Vol. 66, Issue 11 https://doi.org/10.1111/fwb.13824	journal	September 2021
Spatial gradients in the characteristics of soil-carbon fractions are associated with abiotic features but not microbial communities Sengupta, Aditi; Indivero, Julia; Gunn, Cailene Biogeosciences, Vol. 16, Issue 19 https://doi.org/10.5194/bg-16-3911-2019	journal	January 2019
Phases saturation control on mixing driven reactions in 3D porous media Markale, Ishaan; Cimmarusti, Gabriele M.; Britton, Melanie M. arXiv https://doi.org/10.48550/arxiv.2102.12113	text	January 2021
Bacterial Communities in Ground-and Surface Water Mixing Zone Induced by Seasonal Heavy Extraction of Groundwater Lee, Ji-Hoon; Lee, Bong-Joo; Unno, Tatsuya Taylor & Francis https://doi.org/10.6084/m9.figshare.7066493	text	January 2018
Coupling Spatiotemporal Community Assembly Processes to Changes in Microbial Metabolism Graham, Emily B.; Crump, Alex R.; Resch, Charles T. Frontiers in Microbiology, Vol. 7 https://doi.org/10.3389/fmicb.2016.01949	journal	December 2016
Variations in bacterial and archaeal communities along depth profiles of Alaskan soil cores Tripathi, Binu Mani; Kim, Mincheol; Kim, Yongwon Scientific Reports, Vol. 8, Issue 1 https://doi.org/10.1038/s41598-017-18777-x	journal	January 2018
Dam Operations and Subsurface Hydrogeology Control Dynamics of Hydrologic Exchange Flows in a Regulated River Reach Shuai, Pin; Chen, Xingyuan; Song, Xuehang Water Resources Research, Vol. 55, Issue 4 https://doi.org/10.1029/2018wr024193	journal	April 2019
Responses of microbial activity in hyporheic pore water to biogeochemical changes in a drying headwater stream Harjung, Astrid; Perujo, Núria; Butturini, Andrea Freshwater Biology https://doi.org/10.1111/fwb.13258	journal	February 2019
Drought Conditions Maximize the Impact of High-Frequency Flow Variations on Thermal Regimes and Biogeochemical Function in the Hyporheic Zone Song, Xuehang; Chen, Xingyuan; Stegen, James EarthArXiv https://doi.org/10.17605/osf.io/jw4ph	text	January 2018
Application of the microbial community coalescence concept to riverine networks: Riverine microbial community coalescence Mansour, India; Heppell, Catherine M.; Ryo, Masahiro Biological Reviews, Vol. 93, Issue 4 https://doi.org/10.1111/brv.12422	journal	April 2018

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54 ENVIRONMENTAL SCIENCES
biogeochemical hotspot
deterministic selection
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mixing model
organic carbon
phylogenetic beta-diversity
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Title: Groundwater–surface water mixing shifts ecological assembly processes and stimulates organic carbon turnover

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