The MG-RAST Metagenomics Database and Portal in 2015

Wilke, Andreas; Bischof, Jared; Gerlach, Wolfgang; Glass, Elizabeth; Harrison, Travis; Keegan, Kevin; Paczian, Tobias; Trimble, William L.; Bagchi, Saurabh; Grama, Ananth; Chaterji, Somali; Meyer, Folker

doi:10.1093/nar/gkv1322

Title: The MG-RAST Metagenomics Database and Portal in 2015

Journal Article · Wed Dec 09 00:00:00 EST 2015 · Nucleic Acids Research

DOI:https://doi.org/10.1093/nar/gkv1322· OSTI ID:1249423

Wilke, Andreas ^[1]; Bischof, Jared ^[1]; Gerlach, Wolfgang ^[1]; Glass, Elizabeth ^[1]; Harrison, Travis ^[1]; Keegan, Kevin ^[1]; Paczian, Tobias ^[1]; Trimble, William L. ^[1]; Bagchi, Saurabh ^[2]; Grama, Ananth ^[3]; Chaterji, Somali ^[3]; Meyer, Folker ^[1]

Argonne National Lab. (ANL), Argonne, IL (United States); Univ. of Chicago, IL (United States)
Purdue Univ., West Lafayette, IN (United States). School of Electrical & Computer Engineering
Purdue Univ., West Lafayette, IN (United States). Dept. of Computer Sciences

MG-RAST (http://metagenomics.anl.gov) is an opensubmission data portal for processing, analyzing, sharing and disseminating metagenomic datasets. Currently, the system hosts over 200 000 datasets and is continuously updated. The volume of submissions has increased 4-fold over the past 24 months, now averaging 4 terabasepairs per month. In addition to several new features, we report changes to the analysis workflow and the technologies used to scale the pipeline up to the required throughput levels. Lastly, to show possible uses for the data from MG-RAST, we present several examples integrating data and analyses from MG-RAST into popular third-party analysis tools or sequence alignment tools.

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Research Organization:: Argonne National Laboratory (ANL), Argonne, IL (United States)

Sponsoring Organization:: USDOE Office of Science - Office of Advanced Scientific Computing Research; National Institutes of Health (NIH)

Grant/Contract Number:: AC02-06CH11357; U01HG006537

OSTI ID:: 1249423

Journal Information:: Nucleic Acids Research, Vol. 44, Issue D1; ISSN 0305-1048

Publisher:: Oxford University PressCopyright Statement

Country of Publication:: United States

Language:: English

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Cited by: 112 works

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References (26)

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes Meyer, F.; Paarmann, D.; D'Souza, M. BMC Bioinformatics, Vol. 9, Issue 1 https://doi.org/10.1186/1471-2105-9-386	journal	September 2008
Metagenomics - a guide from sampling to data analysis Thomas, Torsten; Gilbert, Jack; Meyer, Folker Microbial Informatics and Experimentation, Vol. 2, Issue 1 https://doi.org/10.1186/2042-5783-2-3	journal	February 2012
Using clouds for metagenomics: A case study Wilkening, Jared; Wilke, Andreas; Desai, Narayan 2009 IEEE International Conference on Cluster Computing and Workshops https://doi.org/10.1109/CLUSTR.2009.5289187	conference	August 2009
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications Yilmaz, Pelin; Kottmann, Renzo; Field, Dawn Nature Biotechnology, Vol. 29, Issue 5 https://doi.org/10.1038/nbt.1823	journal	May 2011
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences Li, W.; Godzik, A. Bioinformatics, Vol. 22, Issue 13 https://doi.org/10.1093/bioinformatics/btl158	journal	May 2006
BLAT---The BLAST-Like Alignment Tool Kent, W. J. Genome Research, Vol. 12, Issue 4 https://doi.org/10.1101/gr.229202. Article published online before March 2002	journal	March 2002
The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools Wilke, Andreas; Harrison, Travis; Wilkening, Jared BMC Bioinformatics, Vol. 13, Issue 1 https://doi.org/10.1186/1471-2105-13-141	journal	January 2012
The Subsystems Approach to Genome Annotation and its Use in the Project to Annotate 1000 Genomes Overbeek, R. Nucleic Acids Research, Vol. 33, Issue 17 https://doi.org/10.1093/nar/gki866	journal	September 2005
Data, information, knowledge and principle: back to metabolism in KEGG Kanehisa, Minoru; Goto, Susumu; Sato, Yoko Nucleic Acids Research, Vol. 42, Issue D1 https://doi.org/10.1093/nar/gkt1076	journal	November 2013
The Genomic Standards Consortium Field, Dawn; Amaral-Zettler, Linda; Cochrane, Guy PLoS Biology, Vol. 9, Issue 6 https://doi.org/10.1371/journal.pbio.1001088	journal	June 2011
Metazen – metadata capture for metagenomes Bischof, Jared; Harrison, Travis; Paczian, Tobias Standards in Genomic Sciences, Vol. 9, Issue 1 https://doi.org/10.1186/1944-3277-9-18	journal	January 2014
The environment ontology: contextualising biological and biomedical entities Buttigieg, Pier; Morrison, Norman; Smith, Barry Journal of Biomedical Semantics, Vol. 4, Issue 1 https://doi.org/10.1186/2041-1480-4-43	journal	January 2013
Shock: Active Storage for Multicloud Streaming Data Analysis Bischof, Jared; Wilke, Andreas; Gerlach, Wolfgang 2015 IEEE/ACM 2nd International Symposium on Big Data Computing (BDC) https://doi.org/10.1109/BDC.2015.40	conference	December 2015
Skyport - Container-Based Execution Environment Management for Multi-cloud Scientific Workflows Gerlach, Wolfgang; Tang, Wei; Keegan, Kevin 2014 5th International Workshop on Data-Intensive Computing in the Clouds (DataCloud) https://doi.org/10.1109/DataCloud.2014.6	conference	November 2014
Workload characterization for MG-RAST metagenomic data analytics service in the cloud Tang, Wei; Bischof, Jared; Desai, Narayan 2014 IEEE International Conference on Big Data (Big Data) https://doi.org/10.1109/BigData.2014.7004394	conference	October 2014
Phyloseq: a Bioconductor Package for Handling and Analysis of High-Throughput Phylogenetic Sequence data McMURDIE, Paul J.; Holmes, Susan Proceedings of the Pacific Symposium, Biocomputing 2012 https://doi.org/10.1142/9789814366496_0023	conference	June 2012
Cross-biome metagenomic analyses of soil microbial communities and their functional attributes Fierer, N.; Leff, J. W.; Adams, B. J. Proceedings of the National Academy of Sciences, Vol. 109, Issue 52 https://doi.org/10.1073/pnas.1215210110	journal	December 2012
MUSCLE: multiple sequence alignment with high accuracy and high throughput Edgar, R. C. Nucleic Acids Research, Vol. 32, Issue 5, p. 1792-1797 https://doi.org/10.1093/nar/gkh340	journal	March 2004
EBI metagenomics—a new resource for the analysis and archiving of metagenomic data Hunter, Sarah; Corbett, Matthew; Denise, Hubert Nucleic Acids Research, Vol. 42, Issue D1 https://doi.org/10.1093/nar/gkt961	journal	October 2013
IMG/M: a data management and analysis system for metagenomes Markowitz, V. M.; Ivanova, N. N.; Szeto, E. Nucleic Acids Research, Vol. 36, Issue Database https://doi.org/10.1093/nar/gkm869	journal	December 2007
Draft genome sequence of Halomonas lutea strain YIM 91125T (DSM 23508T) isolated from the alkaline Lake Ebinur in Northwest China Gao, Xiao-Yang; Zhi, Xiao-Yang; Li, Hong-Wei Standards in Genomic Sciences, Vol. 10, Issue 1 https://doi.org/10.1186/1944-3277-10-1	journal	January 2015
InterPro in 2011: new developments in the family and domain prediction database Hunter, S.; Jones, P.; Mitchell, A. Nucleic Acids Research, Vol. 40, Issue D1 https://doi.org/10.1093/nar/gkr948	journal	November 2011
Fast and sensitive protein alignment using DIAMOND Buchfink, Benjamin; Xie, Chao; Huson, Daniel H. Nature Methods, Vol. 12, Issue 1 https://doi.org/10.1038/nmeth.3176	journal	November 2014
Polinton-like viruses are abundant in aquatic ecosystems Bellas, Christopher M.; Sommaruga, Ruben Microbiome, Vol. 9, Issue 1 https://doi.org/10.1186/s40168-020-00956-0	journal	January 2021
InterPro in 2011: new developments in the family and domain prediction database Hunter, S.; Jones, P.; Mitchell, A. Nucleic Acids Research, Vol. 40, Issue 10 https://doi.org/10.1093/nar/gks456	journal	May 2012
BLAT---The BLAST-Like Alignment Tool Kent, W. J. Genome Research, Vol. 12, Issue 4 https://doi.org/10.1101/gr.229202	journal	March 2002

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