Complete genome sequence of Thioalkalivibrio paradoxus type strain ARh 1T, an obligately chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium isolated from a Kenyan soda lake

Berben, Tom; Sorokin, Dimitry Y.; Ivanova, Natalia; Pati, Amrita; Kyrpides, Nikos; Goodwin, Lynne A.; Woyke, Tanja; Muyzer, Gerard

doi:10.1186/s40793-015-0097-7

Title: Complete genome sequence of Thioalkalivibrio paradoxus type strain ARh 1^T, an obligately chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium isolated from a Kenyan soda lake

Journal Article · Thu Nov 19 00:00:00 EST 2015 · Standards in Genomic Sciences

DOI:https://doi.org/10.1186/s40793-015-0097-7· OSTI ID:1241033

Berben, Tom ^[1]; Sorokin, Dimitry Y. ^[2]; Ivanova, Natalia ^[3]; Pati, Amrita ^[3]; Kyrpides, Nikos ^[4]; Goodwin, Lynne A. ^[3]; Woyke, Tanja ^[3];

^[1]

Univ. of Amsterdam, Amsterdam (The Netherlands)
Winogradsky Institute of Microbiology, Moscow (Russia); Delft Univ. of Technology, Delft (The Netherlands)
Joint Genome Institute, Walnut Creek, CA (United States)
Joint Genome Institute, Walnut Creek, CA (United States); King Abdulaziz Univ., Jeddah (Saudi Arabia)

© 2015 Berben et al. Thioalkalivibrio paradoxus strain ARh 1 T is a chemolithoautotrophic, non-motile, Gram-negative bacterium belonging to the Gammaproteobacteria that was isolated from samples of haloalkaline soda lakes. It derives energy from the oxidation of reduced sulfur compounds and is notable for its ability to grow on thiocyanate as its sole source of electrons, sulfur and nitrogen. The full genome consists of 3,756,729 bp and comprises 3,500 protein-coding and 57 RNA-coding genes. This organism was sequenced as part of the community science program at the DOE Joint Genome Institute.

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Research Organization:: USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER)

Grant/Contract Number:: AC02-05CH11231

OSTI ID:: 1241033

Alternate ID(s):: OSTI ID: 1378653

Journal Information:: Standards in Genomic Sciences, Vol. 10, Issue 1; ISSN 1944-3277

Publisher:: BioMed CentralCopyright Statement

Country of Publication:: United States

Language:: English

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Cited by: 4 works

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Structure of the flavocytochrome c sulfide dehydrogenase associated with the copper-binding protein CopC from the haloalkaliphilic sulfur-oxidizing bacterium Thioalkalivibrio paradoxus ARh 1 Osipov, Eugeny M.; Lilina, Anastasia V.; Tsallagov, Stanislav I. Acta Crystallographica Section D Structural Biology, Vol. 74, Issue 7 https://doi.org/10.1107/s2059798318005648	journal	June 2018
Comparative Genome Analysis of Three Thiocyanate Oxidizing Thioalkalivibrio Species Isolated from Soda Lakes Berben, Tom; Overmars, Lex; Sorokin, Dimitry Y. Frontiers in Microbiology, Vol. 8 https://doi.org/10.3389/fmicb.2017.00254	journal	February 2017
Exploration of Microbial Diversity and Community Structure of Lonar Lake: The Only Hypersaline Meteorite Crater Lake within Basalt Rock Paul, Dhiraj; Kumbhare, Shreyas V.; Mhatre, Snehit S. Frontiers in Microbiology, Vol. 6 https://doi.org/10.3389/fmicb.2015.01553	journal	January 2016

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59 BASIC BIOLOGICAL SCIENCES
haloalkaliphilic
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sulfur-oxidizing bacteria
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Title: Complete genome sequence of Thioalkalivibrio paradoxus type strain ARh 1T, an obligately chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium isolated from a Kenyan soda lake

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Title: Complete genome sequence of Thioalkalivibrio paradoxus type strain ARh 1^T, an obligately chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium isolated from a Kenyan soda lake