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Title: Integrating ecological and engineering concepts of resilience in microbial communities

Journal Article · · Frontiers in Microbiology
 [1];  [2];  [1];  [1]
  1. Pacific Northwest National Lab. (PNNL), Richland, WA (United States). Biological Sciences Division
  2. Pacific Northwest National Lab. (PNNL), Richland, WA (United States). Environmental Molecular Sciences Lab.

We note that many definitions of resilience have been proffered for natural and engineered ecosystems, but a conceptual consensus on resilience in microbial communities is still lacking. Here, we argue that the disconnect largely results from the wide variance in microbial community complexity, which range from simple synthetic consortia to complex natural communities, and divergence between the typical practical outcomes emphasized by ecologists and engineers. Viewing microbial communities as elasto-plastic systems, we argue that this gap between the engineering and ecological definitions of resilience stems from their respective emphases on elastic and plastic deformation, respectively. We propose that the two concepts may be fundamentally united around the resilience of function rather than state in microbial communities and the regularity in the relationship between environmental variation and a community’s functional response. Furthermore, we posit that functional resilience is an intrinsic property of microbial communities, suggesting that state changes in response to environmental variation may be a key mechanism driving resilience in microbial communities.

Research Organization:
Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)
Sponsoring Organization:
USDOE
Grant/Contract Number:
AC05-76RL01830
OSTI ID:
1240232
Report Number(s):
PNNL-SA-112189; KP1601010
Journal Information:
Frontiers in Microbiology, Vol. 6; ISSN 1664-302X
Publisher:
Frontiers Research FoundationCopyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 38 works
Citation information provided by
Web of Science

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Gut Reactions: Breaking Down Xenobiotic–Microbiome Interactions journal February 2019
Disentangling the Influence of Environment, Host Specificity and Thallus Differentiation on Bacterial Communities in Siphonous Green Seaweeds journal April 2019
Antibiotic resilience: a necessary concept to complement antibiotic resistance? journal December 2019
Community recovery dynamics in yellow perch microbiome after gradual and constant metallic perturbations journal February 2020
Engineering microbial consortia for controllable outputs journal March 2016
Microbial Communities Are Well Adapted to Disturbances in Energy Input journal October 2016
Synthetic photosynthetic consortia define interactions leading to robustness and photoproduction journal January 2017
Potential and active functions in the gut microbiota of a healthy human cohort journal July 2017
A Generalized Spatial Measure for Resilience of Microbial Systems journal April 2016
Regulation-Structured Dynamic Metabolic Model Provides a Potential Mechanism for Delayed Enzyme Response in Denitrification Process journal September 2017
Vancomycin and/or Multidrug-Resistant Citrobacter Freundii Altered the Metabolic Pattern of Soil Microbial Community journal May 2018
Use of the PCR-DGGE Method for the Analysis of the Bacterial Community Structure in Soil Treated With the Cephalosporin Antibiotic Cefuroxime and/or Inoculated With a Multidrug-Resistant Pseudomonas putida Strain MC1 journal June 2018
Application of Erythromycin and/or Raoultella sp. Strain MC3 Alters the Metabolic Activity of Soil Microbial Communities as Revealed by the Community Level Physiological Profiling Approach journal November 2020
Functional Diversity of Soil Microbial Communities in Response to the Application of Cefuroxime and/or Antibiotic-Resistant Pseudomonas putida Strain MC1 journal October 2018