skip to main content
OSTI.GOV title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Label-free functional nucleic acid sensors for detecting target agents

Patent ·
OSTI ID:1167209

A general methodology to design label-free fluorescent functional nucleic acid sensors using a vacant site approach and an abasic site approach is described. In one example, a method for designing label-free fluorescent functional nucleic acid sensors (e.g., those that include a DNAzyme, aptamer or aptazyme) that have a tunable dynamic range through the introduction of an abasic site (e.g., dSpacer) or a vacant site into the functional nucleic acids. Also provided is a general method for designing label-free fluorescent aptamer sensors based on the regulation of malachite green (MG) fluorescence. A general method for designing label-free fluorescent catalytic and molecular beacons (CAMBs) is also provided. The methods demonstrated here can be used to design many other label-free fluorescent sensors to detect a wide range of analytes. Sensors and methods of using the disclosed sensors are also provided.

Research Organization:
Univ. of Illinois at Urbana-Champaign, IL (United States)
Sponsoring Organization:
USDOE
DOE Contract Number:
FG02-08ER64568
Assignee:
The Board of Trustees of the University of Illinois (Urbana, IL)
Patent Number(s):
8,933,210
Application Number:
13/267,414
OSTI ID:
1167209
Resource Relation:
Patent File Date: 2011 Oct 06
Country of Publication:
United States
Language:
English

References (15)

Nucleic acid enzyme biosensors for ions patent March 2007
Fluorescence based biosensor patent February 2008
Biosensors based on directed assembly of particles patent February 2009
Simple catalytic DNA biosensors for ions based on color changes patent May 2009
Nucleic acid biosensors patent November 2009
Label-Free Fluorescent Functional DNA Sensors Using Unmodified DNA: A Vacant Site Approach journal May 2010
A Lead-Dependent DNAzyme with a Two-Step Mechanism journal June 2003
Biochemical Characterization of a Uranyl Ion-Specific DNAzyme journal February 2009
Adenosine-Dependent Assembly of Aptazyme-Functionalized Gold Nanoparticles and Its Application as a Colorimetric Biosensor journal March 2004
Preparation of aptamer-linked gold nanoparticle purple aggregates for colorimetric sensing of analytes journal June 2006
Fast Colorimetric Sensing of Adenosine and Cocaine Based on a General Sensor Design Involving Aptamers and Nanoparticles journal January 2006
Structure-Switching Signaling Aptamers journal April 2003
A DNA-Protein Nanoengine for “On-Demand” Release and Precise Delivery of Molecules journal August 2005
Abasic Site-Containing DNAzyme and Aptamer for Label-Free Fluorescent Detection of Pb 2+ and Adenosine with High Sensitivity, Selectivity, and Tunable Dynamic Range journal October 2009
Label-Free Fluorescent Aptamer Sensor Based on Regulation of Malachite Green Fluorescence journal January 2010

Similar Records

DNA Templated Metal Nanoclusters: From Emergent Properties to Unique Applications
Journal Article · Fri Oct 19 00:00:00 EDT 2018 · Accounts of Chemical Research · OSTI ID:1167209

Function and dynamics of aptamers: A case study on the malachite green aptamer
Thesis/Dissertation · Tue Jan 01 00:00:00 EST 2008 · OSTI ID:1167209

Photocaged functional nucleic acids for spatiotemporal imaging in biology
Journal Article · Wed Jul 08 00:00:00 EDT 2020 · Current Opinion in Chemical Biology · OSTI ID:1167209

Related Subjects