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Title: Simulating data processing for an Advanced Ion Mobility Mass Spectrometer

Abstract

We have designed and implemented a Cray XD-1-based sim- ulation of data capture and signal processing for an ad- vanced Ion Mobility mass spectrometer (Hadamard trans- form Ion Mobility). Our simulation is a hybrid application that uses both an FPGA component and a CPU-based soft- ware component to simulate Ion Mobility mass spectrome- try data processing. The FPGA component includes data capture and accumulation, as well as a more sophisticated deconvolution algorithm based on a PNNL-developed en- hancement to standard Hadamard transform Ion Mobility spectrometry. The software portion is in charge of stream- ing data to the FPGA and collecting results. We expect the computational and memory addressing logic of the FPGA component to be portable to an instrument-attached FPGA board that can be interfaced with a Hadamard transform Ion Mobility mass spectrometer.

Authors:
; ; ;
Publication Date:
Research Org.:
Pacific Northwest National Lab. (PNNL), Richland, WA (United States)
Sponsoring Org.:
USDOE
OSTI Identifier:
990144
Report Number(s):
PNNL-SA-57104
TRN: US201020%%148
DOE Contract Number:  
AC05-76RL01830
Resource Type:
Conference
Resource Relation:
Conference: Proceedings of the 1st international workshop on High-performance reconfigurable computing technology and applications (HPRCTA'07): held in conjunction with SC07, NOV 10-16, 2007, Reno Nevada, 21-29
Country of Publication:
United States
Language:
English
Subject:
99 GENERAL AND MISCELLANEOUS//MATHEMATICS, COMPUTING, AND INFORMATION SCIENCE; ALGORITHMS; DATA PROCESSING; ION MOBILITY; MASS SPECTROMETERS; MASS SPECTROSCOPY; PROCESSING; SIMULATION; SPECTROSCOPY; Data-intesive computing; reconfigurable computing; hybrid CPU/FPGA systems; mass spectrometry simulation

Citation Formats

Chavarría-Miranda, Daniel, Clowers, Brian H, Anderson, Gordon A, and Belov, Mikhail E. Simulating data processing for an Advanced Ion Mobility Mass Spectrometer. United States: N. p., 2007. Web.
Chavarría-Miranda, Daniel, Clowers, Brian H, Anderson, Gordon A, & Belov, Mikhail E. Simulating data processing for an Advanced Ion Mobility Mass Spectrometer. United States.
Chavarría-Miranda, Daniel, Clowers, Brian H, Anderson, Gordon A, and Belov, Mikhail E. 2007. "Simulating data processing for an Advanced Ion Mobility Mass Spectrometer". United States.
@article{osti_990144,
title = {Simulating data processing for an Advanced Ion Mobility Mass Spectrometer},
author = {Chavarría-Miranda, Daniel and Clowers, Brian H and Anderson, Gordon A and Belov, Mikhail E},
abstractNote = {We have designed and implemented a Cray XD-1-based sim- ulation of data capture and signal processing for an ad- vanced Ion Mobility mass spectrometer (Hadamard trans- form Ion Mobility). Our simulation is a hybrid application that uses both an FPGA component and a CPU-based soft- ware component to simulate Ion Mobility mass spectrome- try data processing. The FPGA component includes data capture and accumulation, as well as a more sophisticated deconvolution algorithm based on a PNNL-developed en- hancement to standard Hadamard transform Ion Mobility spectrometry. The software portion is in charge of stream- ing data to the FPGA and collecting results. We expect the computational and memory addressing logic of the FPGA component to be portable to an instrument-attached FPGA board that can be interfaced with a Hadamard transform Ion Mobility mass spectrometer.},
doi = {},
url = {https://www.osti.gov/biblio/990144}, journal = {},
number = ,
volume = ,
place = {United States},
year = {Sat Nov 03 00:00:00 EDT 2007},
month = {Sat Nov 03 00:00:00 EDT 2007}
}

Conference:
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