Simulating data processing for an Advanced Ion Mobility Mass Spectrometer
Abstract
We have designed and implemented a Cray XD-1-based sim- ulation of data capture and signal processing for an ad- vanced Ion Mobility mass spectrometer (Hadamard trans- form Ion Mobility). Our simulation is a hybrid application that uses both an FPGA component and a CPU-based soft- ware component to simulate Ion Mobility mass spectrome- try data processing. The FPGA component includes data capture and accumulation, as well as a more sophisticated deconvolution algorithm based on a PNNL-developed en- hancement to standard Hadamard transform Ion Mobility spectrometry. The software portion is in charge of stream- ing data to the FPGA and collecting results. We expect the computational and memory addressing logic of the FPGA component to be portable to an instrument-attached FPGA board that can be interfaced with a Hadamard transform Ion Mobility mass spectrometer.
- Authors:
- Publication Date:
- Research Org.:
- Pacific Northwest National Lab. (PNNL), Richland, WA (United States)
- Sponsoring Org.:
- USDOE
- OSTI Identifier:
- 990144
- Report Number(s):
- PNNL-SA-57104
TRN: US201020%%148
- DOE Contract Number:
- AC05-76RL01830
- Resource Type:
- Conference
- Resource Relation:
- Conference: Proceedings of the 1st international workshop on High-performance reconfigurable computing technology and applications (HPRCTA'07): held in conjunction with SC07, NOV 10-16, 2007, Reno Nevada, 21-29
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 99 GENERAL AND MISCELLANEOUS//MATHEMATICS, COMPUTING, AND INFORMATION SCIENCE; ALGORITHMS; DATA PROCESSING; ION MOBILITY; MASS SPECTROMETERS; MASS SPECTROSCOPY; PROCESSING; SIMULATION; SPECTROSCOPY; Data-intesive computing; reconfigurable computing; hybrid CPU/FPGA systems; mass spectrometry simulation
Citation Formats
Chavarría-Miranda, Daniel, Clowers, Brian H, Anderson, Gordon A, and Belov, Mikhail E. Simulating data processing for an Advanced Ion Mobility Mass Spectrometer. United States: N. p., 2007.
Web.
Chavarría-Miranda, Daniel, Clowers, Brian H, Anderson, Gordon A, & Belov, Mikhail E. Simulating data processing for an Advanced Ion Mobility Mass Spectrometer. United States.
Chavarría-Miranda, Daniel, Clowers, Brian H, Anderson, Gordon A, and Belov, Mikhail E. 2007.
"Simulating data processing for an Advanced Ion Mobility Mass Spectrometer". United States.
@article{osti_990144,
title = {Simulating data processing for an Advanced Ion Mobility Mass Spectrometer},
author = {Chavarría-Miranda, Daniel and Clowers, Brian H and Anderson, Gordon A and Belov, Mikhail E},
abstractNote = {We have designed and implemented a Cray XD-1-based sim- ulation of data capture and signal processing for an ad- vanced Ion Mobility mass spectrometer (Hadamard trans- form Ion Mobility). Our simulation is a hybrid application that uses both an FPGA component and a CPU-based soft- ware component to simulate Ion Mobility mass spectrome- try data processing. The FPGA component includes data capture and accumulation, as well as a more sophisticated deconvolution algorithm based on a PNNL-developed en- hancement to standard Hadamard transform Ion Mobility spectrometry. The software portion is in charge of stream- ing data to the FPGA and collecting results. We expect the computational and memory addressing logic of the FPGA component to be portable to an instrument-attached FPGA board that can be interfaced with a Hadamard transform Ion Mobility mass spectrometer.},
doi = {},
url = {https://www.osti.gov/biblio/990144},
journal = {},
number = ,
volume = ,
place = {United States},
year = {Sat Nov 03 00:00:00 EDT 2007},
month = {Sat Nov 03 00:00:00 EDT 2007}
}