GELBANK : A database of annotated two-dimensional gel electrophoresis patterns of biological systems with completed genomes.
Abstract
GELBANK is a publicly available database of two-dimensional gel electrophoresis (2DE) gel patterns of proteomes from organisms with known genome information (available at <http://gelbank.anl.gov> and ftp://bioinformatics.anl.gov/gelbank/). Currently it includes 131 completed, mostly microbial proteomes available from the National Center for Biotechnology Information. A web interface allows the upload of 2D gel patterns and their annotation for registered users. The images are organized by species, tissue type, separation method, sample type and staining method. The database can be queried based on protein or 2DE-pattern attributes. A web interface allows registered users to assign molecular weight and pH gradient profiles to their own 2D gel patterns as well as to link protein identifications to a given spot on the pattern. The website presents all of the submitted 2D gel patterns where the end-user can dynamically display the images or parts of images along with molecular weight, pH profile information and linked protein identification. A collection of images can be selected for the creation of animations from which the user can select sub-regions of interest and unlimited 2D gel patterns for visualization. The website currently presents 233 identifications for 81 gel patterns for Homo sapiens, Methanococcus jannaschii, Pyro coccus furiosus, Shewanella oneidensis, Escherichiamore »
- Authors:
- Publication Date:
- Research Org.:
- Argonne National Lab. (ANL), Argonne, IL (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC)
- OSTI Identifier:
- 961415
- Report Number(s):
- ANL/BIO/JA-47521
Journal ID: ISSN 0305-1048; NARHAD; TRN: US201012%%1478
- DOE Contract Number:
- DE-AC02-06CH11357
- Resource Type:
- Journal Article
- Journal Name:
- Nucleic Acids Res.
- Additional Journal Information:
- Journal Volume: 32; Journal Issue: Spec. Suppl. ; Jan. 1, 2004; Journal ID: ISSN 0305-1048
- Country of Publication:
- United States
- Language:
- ENGLISH
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; 99 GENERAL AND MISCELLANEOUS//MATHEMATICS, COMPUTING, AND INFORMATION SCIENCE; BACTERIA; BIOTECHNOLOGY; DATA COMPILATION; ELECTROPHORESIS; ESCHERICHIA COLI; GELS; HUMAN POPULATIONS; IMAGES; MICROORGANISMS; MOLECULAR WEIGHT; PH VALUE; PROTEINS; WEBSITES
Citation Formats
Babnigg, G, Giometti, C S, and Biosciences Division. GELBANK : A database of annotated two-dimensional gel electrophoresis patterns of biological systems with completed genomes.. United States: N. p., 2004.
Web. doi:10.1093/nar/gkh089.
Babnigg, G, Giometti, C S, & Biosciences Division. GELBANK : A database of annotated two-dimensional gel electrophoresis patterns of biological systems with completed genomes.. United States. https://doi.org/10.1093/nar/gkh089
Babnigg, G, Giometti, C S, and Biosciences Division. 2004.
"GELBANK : A database of annotated two-dimensional gel electrophoresis patterns of biological systems with completed genomes.". United States. https://doi.org/10.1093/nar/gkh089.
@article{osti_961415,
title = {GELBANK : A database of annotated two-dimensional gel electrophoresis patterns of biological systems with completed genomes.},
author = {Babnigg, G and Giometti, C S and Biosciences Division},
abstractNote = {GELBANK is a publicly available database of two-dimensional gel electrophoresis (2DE) gel patterns of proteomes from organisms with known genome information (available at <http://gelbank.anl.gov> and ftp://bioinformatics.anl.gov/gelbank/). Currently it includes 131 completed, mostly microbial proteomes available from the National Center for Biotechnology Information. A web interface allows the upload of 2D gel patterns and their annotation for registered users. The images are organized by species, tissue type, separation method, sample type and staining method. The database can be queried based on protein or 2DE-pattern attributes. A web interface allows registered users to assign molecular weight and pH gradient profiles to their own 2D gel patterns as well as to link protein identifications to a given spot on the pattern. The website presents all of the submitted 2D gel patterns where the end-user can dynamically display the images or parts of images along with molecular weight, pH profile information and linked protein identification. A collection of images can be selected for the creation of animations from which the user can select sub-regions of interest and unlimited 2D gel patterns for visualization. The website currently presents 233 identifications for 81 gel patterns for Homo sapiens, Methanococcus jannaschii, Pyro coccus furiosus, Shewanella oneidensis, Escherichia coli and Deinococcus radiodurans.},
doi = {10.1093/nar/gkh089},
url = {https://www.osti.gov/biblio/961415},
journal = {Nucleic Acids Res.},
issn = {0305-1048},
number = Spec. Suppl. ; Jan. 1, 2004,
volume = 32,
place = {United States},
year = {Thu Jan 01 00:00:00 EST 2004},
month = {Thu Jan 01 00:00:00 EST 2004}
}