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Title: Automatic Tool for Local Assembly Structures

Whole community shotgun sequencing of total DNA (i.e. metagenomics) and total RNA (i.e. metatranscriptomics) has provided a wealth of information in the microbial community structure, predicted functions, metabolic networks, and is even able to reconstruct complete genomes directly. Here we present ATLAS (Automatic Tool for Local Assembly Structures) a comprehensive pipeline for assembly, annotation, genomic binning of metagenomic and metatranscriptomic data with an integrated framework for Multi-Omics. This will provide an open source tool for the Multi-Omic community at large.
Publication Date:
OSTI Identifier:
Report Number(s):
ATLAS; 004969MLTPL00
Battelle IPID 30997-E
DOE Contract Number:
Software Revision:
Software Package Number:
Software CPU:
Open Source:
Several open source programs combined.
Source Code Available:
Other Software Info:
Available as open source.
Related Software:
Several open source programs, combined.
Research Org:
Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)
Sponsoring Org:
Contributing Orgs:
Battelle Memorial Institute, Pacific Northwest Division (PNNL)
Country of Publication:
United States

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