Possible role of interference, protein noise, and sink effects in nonphotochemical quenching in photosynthetic complexes

Berman, Gennady P.; Nesterov, Alexander I.; Gurvitz, Shmuel; Sayre, Richard T.

doi:10.1007/s00285-016-1016-2

Title: Possible role of interference, protein noise, and sink effects in nonphotochemical quenching in photosynthetic complexes

Journal Article · Sat Apr 30 00:00:00 EDT 2016 · Journal of Mathematical Biology

DOI:https://doi.org/10.1007/s00285-016-1016-2· OSTI ID:1304705

Berman, Gennady P.;

; Gurvitz, Shmuel; Sayre, Richard T.

Here, we analyze theoretically a simple and consistent quantum mechanical model that reveals the possible role of quantum interference, protein noise, and sink effects in the nonphotochemical quenching (NPQ) in light-harvesting complexes (LHCs). The model consists of a network of five interconnected sites (excitonic states of light-sensitive molecules) responsible for the NPQ mechanism. The model also includes the “damaging” and the dissipative channels. The damaging channel is responsible for production of singlet oxygen and other destructive outcomes. In this model, both damaging and “dissipative” charge transfer channels are described by discrete electron energy levels attached to their sinks, that mimic the continuum part of electron energy spectrum. All five excitonic sites interact with the protein environment that is modeled using a stochastic process. Our approach allowed us to derive the exact and closed system of linear ordinary differential equations for the reduced density matrix and its first momentums. Moreover, these equations are solved numerically including for strong interactions between the light-sensitive molecules and protein environment. As an example, we apply our model to demonstrate possible contributions of quantum interference, protein noise, and sink effects in the NPQ mechanism in the CP29 minor LHC. The numerical simulations show that using proper combination of quantum interference effects, properties of noise, and sinks, one can significantly suppress the damaging channel. Finally, our findings demonstrate the possible role of interference, protein noise, and sink effects for modeling, engineering, and optimizing the performance of the NPQ processes in both natural and artificial light-harvesting complexes.

View Accepted Manuscript (DOE)

Cite

Export

Save

Research Organization:: Los Alamos National Laboratory (LANL), Los Alamos, NM (United States)

Sponsoring Organization:: USDOE National Nuclear Security Administration (NNSA)

Grant/Contract Number:: AC52-06NA25396; 15349; 711091

OSTI ID:: 1304705

Report Number(s):: LA-UR-14-29366

Journal Information:: Journal of Mathematical Biology, Vol. 74, Issue 1-2; ISSN 0303-6812

Publisher:: SpringerCopyright Statement

Country of Publication:: United States

Language:: English

Citation Metrics:

Cited by: 1 work

Citation information provided by
Web of Science

References (93)

Modeling charge transfer in the photosynthetic reaction center Pudlak, Michal; Pinčak, Richard Physical Review E, Vol. 68, Issue 6 https://doi.org/10.1103/PhysRevE.68.061901	journal	December 2003
Coherent nuclear dynamics at room temperature in bacterial reaction centers. Vos, M. H.; Jones, M. R.; Hunter, C. N. Proceedings of the National Academy of Sciences, Vol. 91, Issue 26 https://doi.org/10.1073/pnas.91.26.12701	journal	December 1994
Coherently wired light-harvesting in photosynthetic marine algae at ambient temperature Collini, Elisabetta; Wong, Cathy Y.; Wilk, Krystyna E. Nature, Vol. 463, Issue 7281 https://doi.org/10.1038/nature08811	journal	February 2010
Spectroscopic Properties of Reaction Center Pigments in Photosystem II Core Complexes: Revision of the Multimer Model Raszewski, Grzegorz; Diner, Bruce A.; Schlodder, Eberhard Biophysical Journal, Vol. 95, Issue 1 https://doi.org/10.1529/biophysj.107.123935	journal	July 2008
Electron transfers in chemistry and biology Marcus, R. A.; Sutin, Norman Biochimica et Biophysica Acta (BBA) - Reviews on Bioenergetics, Vol. 811, Issue 3 https://doi.org/10.1016/0304-4173(85)90014-X	journal	August 1985
Electron transfer reactions: generalized spin-boson approach Merkli, M.; Berman, G. P.; Sayre, R. Journal of Mathematical Chemistry, Vol. 51, Issue 3 https://doi.org/10.1007/s10910-012-0124-5	journal	December 2012
On the relationship between non-photochemical quenching and photoprotection of Photosystem II Lambrev, Petar H.; Miloslavina, Yuliya; Jahns, Peter Biochimica et Biophysica Acta (BBA) - Bioenergetics, Vol. 1817, Issue 5 https://doi.org/10.1016/j.bbabio.2012.02.002	journal	May 2012
Photosystem-II damage and repair cycle in chloroplasts: what modulates the rate of photodamage in vivo? Melis, Anastasios Trends in Plant Science, Vol. 4, Issue 4 https://doi.org/10.1016/S1360-1385(99)01387-4	journal	April 1999
Kinetic Modeling of Charge-Transfer Quenching in the CP29 Minor Complex Cheng, Yuan-Chung; Ahn, Tae Kyu; Avenson, Thomas J. The Journal of Physical Chemistry B, Vol. 112, Issue 42 https://doi.org/10.1021/jp802730c	journal	October 2008
Noise-assisted quantum electron transfer in photosynthetic complexes Nesterov, Alexander I.; Berman, Gennady P.; Sánchez Martínez, José Manuel Journal of Mathematical Chemistry, Vol. 51, Issue 9 https://doi.org/10.1007/s10910-013-0226-8	journal	July 2013
Noise-assisted energy transfer in quantum networks and light-harvesting complexes Chin, A. W.; Datta, A.; Caruso, F. New Journal of Physics, Vol. 12, Issue 6 https://doi.org/10.1088/1367-2630/12/6/065002	journal	June 2010
On the analysis of non-photochemical chlorophyll fluorescence quenching curves Holzwarth, Alfred R.; Lenk, Dagmar; Jahns, Peter Biochimica et Biophysica Acta (BBA) - Bioenergetics, Vol. 1827, Issue 6 https://doi.org/10.1016/j.bbabio.2013.02.011	journal	June 2013
Physcomitrella patens mutants affected on heat dissipation clarify the evolution of photoprotection mechanisms upon land colonization Alboresi, A.; Gerotto, C.; Giacometti, G. M. Proceedings of the National Academy of Sciences, Vol. 107, Issue 24 https://doi.org/10.1073/pnas.1002873107	journal	May 2010
Protein dynamics and 1/f noise Dewey, T. G.; Bann, J. G. Biophysical Journal, Vol. 63, Issue 2 https://doi.org/10.1016/S0006-3495(92)81603-X	journal	August 1992
Theoretical examination of quantum coherence in a photosynthetic system at physiological temperature Ishizaki, A.; Fleming, G. R. Proceedings of the National Academy of Sciences, Vol. 106, Issue 41 https://doi.org/10.1073/pnas.0908989106	journal	October 2009
Xanthophyll cycle-dependent quenching of photosystem II chlorophyll a fluorescence: formation of a quenching complex with a short fluorescence lifetime. Gilmore, A. M.; Hazlett, T. L. Proceedings of the National Academy of Sciences, Vol. 92, Issue 6, p. 2273-2277 https://doi.org/10.1073/pnas.92.6.2273	journal	March 1995
On the adequacy of the Redfield equation and related approaches to the study of quantum dynamics in electronic energy transfer Ishizaki, Akihito; Fleming, Graham R. The Journal of Chemical Physics, Vol. 130, Issue 23 https://doi.org/10.1063/1.3155214	journal	June 2009
Understanding the Energy Transfer Function of LHCII, the Major Light-Harvesting Complex of Green Plants ^† van Amerongen, Herbert; van Grondelle, Rienk The Journal of Physical Chemistry B, Vol. 105, Issue 3 https://doi.org/10.1021/jp0028406	journal	January 2001
Super-radiant dynamics, doorways and resonances in nuclei and other open mesoscopic systems Auerbach, Naftali; Zelevinsky, Vladimir Reports on Progress in Physics, Vol. 74, Issue 10 https://doi.org/10.1088/0034-4885/74/10/106301	journal	September 2011
Open system of interacting fermions: Statistical properties of cross sections and fluctuations Celardo, G. L.; Izrailev, F. M.; Zelevinsky, V. G. Physical Review E, Vol. 76, Issue 3 https://doi.org/10.1103/PhysRevE.76.031119	journal	September 2007
Evidence for direct carotenoid involvement in the regulation of photosynthetic light harvesting Ma, Y. -Z.; Holt, N. E.; Li, X. -P. Proceedings of the National Academy of Sciences, Vol. 100, Issue 8 https://doi.org/10.1073/pnas.0736959100	journal	April 2003
A minimal mathematical model of nonphotochemical quenching of chlorophyll fluorescence Ebenhöh, Oliver; Houwaart, Torsten; Lokstein, Heiko Biosystems, Vol. 103, Issue 2 https://doi.org/10.1016/j.biosystems.2010.10.011	journal	February 2011
Modeling of exciton quenching in photosystem II Valkunas, Leonas; Trinkunas, Gediminas; Chmeliov, Jevgenij Physical Chemistry Chemical Physics, Vol. 11, Issue 35 https://doi.org/10.1039/b901848d	journal	January 2009
Discrete and Continuum Spectra in the Unified Shell Model Approach Volya, Alexander; Zelevinsky, Vladimir Physical Review Letters, Vol. 94, Issue 5 https://doi.org/10.1103/PhysRevLett.94.052501	journal	February 2005
Charge-Transfer State as a Possible Signature of a Zeaxanthin−Chlorophyll Dimer in the Non-photochemical Quenching Process in Green Plants Dreuw, Andreas; Fleming, Graham R.; Head-Gordon, Martin The Journal of Physical Chemistry B, Vol. 107, Issue 27 https://doi.org/10.1021/jp034562r	journal	July 2003
An ancient light-harvesting protein is critical for the regulation of algal photosynthesis Peers, Graham; Truong, Thuy B.; Ostendorf, Elisabeth Nature, Vol. 462, Issue 7272 https://doi.org/10.1038/nature08587	journal	November 2009
A Structure-Based Model of Energy Transfer Reveals the Principles of Light Harvesting in Photosystem II Supercomplexes Bennett, Doran I. G.; Amarnath, Kapil; Fleming, Graham R. Journal of the American Chemical Society, Vol. 135, Issue 24 https://doi.org/10.1021/ja403685a	journal	June 2013
Evidence for wavelike energy transfer through quantum coherence in photosynthetic systems Engel, Gregory S.; Calhoun, Tessa R.; Read, Elizabeth L. Nature, Vol. 446, Issue 7137 https://doi.org/10.1038/nature05678	journal	April 2007
Dissipative Exciton Motion in a Chlorophyll a / b Dimer of the Light Harvesting Complex of Photosystem II: Simulation of Pump−Probe Spectra Renger, Thomas; Voigt, Joachim; May, Volkhard The Journal of Physical Chemistry, Vol. 100, Issue 39 https://doi.org/10.1021/jp960486z	journal	January 1996
Single-residue insertion switches the quaternary structure and exciton states of cryptophyte light-harvesting proteins Harrop, Stephen J.; Wilk, Krystyna E.; Dinshaw, Rayomond Proceedings of the National Academy of Sciences, Vol. 111, Issue 26 https://doi.org/10.1073/pnas.1402538111	journal	June 2014
Coherence Dynamics in Photosynthesis: Protein Protection of Excitonic Coherence Lee, H.; Cheng, Y. -C.; Fleming, G. R. Science, Vol. 316, Issue 5830 https://doi.org/10.1126/science.1142188	journal	June 2007
Dynamics of a chlorophyll dimer in collective and local thermal environments Merkli, M.; Berman, G. P.; Sayre, R. T. Journal of Mathematical Chemistry, Vol. 54, Issue 4 https://doi.org/10.1007/s10910-016-0593-z	journal	January 2016
General implementation of the resolution-of-the-identity and Cholesky representations of electron repulsion integrals within coupled-cluster and equation-of-motion methods: Theory and benchmarks Epifanovsky, Evgeny; Zuev, Dmitry; Feng, Xintian The Journal of Chemical Physics, Vol. 139, Issue 13 https://doi.org/10.1063/1.4820484	journal	October 2013
Electronic pathway in reaction centers from Rhodobacter sphaeroides and Chloroflexus aurantiacus Pudlak, Michal; Pincak, Richard Journal of Biological Physics, Vol. 36, Issue 3 https://doi.org/10.1007/s10867-009-9183-7	journal	January 2010
Regulation of plant light harvesting by thermal dissipation of excess energy de Bianchi, Silvia; Ballottari, Matteo; Dall’Osto, Luca Biochemical Society Transactions, Vol. 38, Issue 2 https://doi.org/10.1042/BST0380651	journal	March 2010
Direct observation of energy transfer in a photosynthetic membrane: chlorophyll b to chlorophyll a transfer in LHC Eads, Daniel D.; Castner, Edward W.; Alberte, Randall S. The Journal of Physical Chemistry, Vol. 93, Issue 26 https://doi.org/10.1021/j100363a001	journal	December 1989
Carotenoid Cation Formation and the Regulation of Photosynthetic Light Harvesting Holt, N. E. Science, Vol. 307, Issue 5708 https://doi.org/10.1126/science.1105833	journal	January 2005
Super-radiance and open quantum systems Volya, Alexander NUCLEI AND MESOSCOPIC PHYSICS: Workshop on Nuclei and Mesoscopic Physics: WNMP 2004, AIP Conference Proceedings https://doi.org/10.1063/1.1996889	conference	January 2005
A pigment-binding protein essential for regulation of photosynthetic light harvesting Li, Xiao-Ping; Björkman, Olle; Shih, Connie Nature, Vol. 403, Issue 6768 https://doi.org/10.1038/35000131	journal	January 2000
Theoretical Investigation of the Role of Strongly Coupled Chlorophyll Dimers in Photoprotection of LHCII Duffy, Christopher D. P.; Ruban, Alexander V.; Barford, William The Journal of Physical Chemistry B, Vol. 112, Issue 39 https://doi.org/10.1021/jp804571k	journal	October 2008
Noise breaking the twofold symmetry of photosynthetic reaction centers: Electron transfer Pinčák, Richard; Pudlak, Michal Physical Review E, Vol. 64, Issue 3 https://doi.org/10.1103/PhysRevE.64.031906	journal	August 2001
Non-Hermitian approach for modeling of noise-assisted quantum electron transfer in photosynthetic complexes Nesterov, A. I.; Berman, G. P.; Bishop, A. R. Fortschritte der Physik, Vol. 61, Issue 2-3 https://doi.org/10.1002/prop.201200069	journal	June 2012
Chlorophyll fluorescence quenching by xanthophylls Dreuw, Andreas; Fleming, Graham R.; Head-Gordon, Martin Physical Chemistry Chemical Physics, Vol. 5, Issue 15 https://doi.org/10.1039/b304944b	journal	January 2003
Pigment Organization and Transfer of Electronic Excitation in the Photosynthetic Unit of Purple Bacteria Hu, Xiche; Ritz, Thorsten; Damjanović, Ana The Journal of Physical Chemistry B, Vol. 101, Issue 19 https://doi.org/10.1021/jp963777g	journal	May 1997
Sensing and Responding to Excess Light Li, Zhirong; Wakao, Setsuko; Fischer, Beat B. Annual Review of Plant Biology, Vol. 60, Issue 1 https://doi.org/10.1146/annurev.arplant.58.032806.103844	journal	June 2009
Effect of the conformational transitions on electron transfer in biological systems Pudlak, Michal Physica A: Statistical Mechanics and its Applications, Vol. 341 https://doi.org/10.1016/j.physa.2004.03.091	journal	October 2004
Noise-Induced Förster Resonant Energy Transfer between Orthogonal Dipoles in Photoexcited Molecules Nalbach, P.; Pugliesi, I.; Langhals, H. Physical Review Letters, Vol. 108, Issue 21 https://doi.org/10.1103/PhysRevLett.108.218302	journal	May 2012
Architecture of a Charge-Transfer State Regulating Light Harvesting in a Plant Antenna Protein Ahn, T. K.; Avenson, T. J.; Ballottari, M. Science, Vol. 320, Issue 5877 https://doi.org/10.1126/science.1154800	journal	May 2008
Förster Resonant Energy Transfer in Orthogonally Arranged Chromophores Langhals, Heinz; Esterbauer, Andreas J.; Walter, Andreas Journal of the American Chemical Society, Vol. 132, Issue 47 https://doi.org/10.1021/ja101544x	journal	December 2010
A non-Hermitian Hamilton operator and the physics of open quantum systems Rotter, Ingrid Journal of Physics A: Mathematical and Theoretical, Vol. 42, Issue 15 https://doi.org/10.1088/1751-8113/42/15/153001	journal	March 2009
On improving the performance of nonphotochemical quenching in CP29 light-harvesting antenna complex Berman, Gennady P.; Nesterov, Alexander I.; Sayre, Richard T. Physics Letters A, Vol. 380, Issue 13 https://doi.org/10.1016/j.physleta.2016.01.052	journal	March 2016
Laser-induced continuum structure Knight, P. L.; Lauder, M. A.; Dalton, B. J. Physics Reports, Vol. 190, Issue 1 https://doi.org/10.1016/0370-1573(90)90089-K	journal	June 1990
Excitation transfer pathways in excitonic aggregates revealed by the stochastic Schrödinger equation Abramavicius, Vytautas; Abramavicius, Darius The Journal of Chemical Physics, Vol. 140, Issue 6 https://doi.org/10.1063/1.4863968	journal	February 2014
Two-dimensional spectroscopy of electronic couplings in photosynthesis Brixner, Tobias; Stenger, Jens; Vaswani, Harsha M. Nature, Vol. 434, Issue 7033 https://doi.org/10.1038/nature03429	journal	March 2005
Transition from isolated to overlapping resonances in the open system of interacting fermions Celardo, G. L.; Izrailev, F. M.; Zelevinsky, V. G. Physics Letters B, Vol. 659, Issue 1-2 https://doi.org/10.1016/j.physletb.2007.11.044	journal	January 2008
Toward an Understanding of the Mechanism of Nonphotochemical Quenching in Green Plants ^† Holt, Nancy E.; Fleming, Graham R.; Niyogi, Krishna K. Biochemistry, Vol. 43, Issue 26 https://doi.org/10.1021/bi0494020	journal	July 2004
Natural strategies for photosynthetic light harvesting Croce, Roberta; van Amerongen, Herbert Nature Chemical Biology, Vol. 10, Issue 7 https://doi.org/10.1038/nchembio.1555	journal	June 2014
Long-lived quantum coherence in photosynthetic complexes at physiological temperature Panitchayangkoon, G.; Hayes, D.; Fransted, K. A. Proceedings of the National Academy of Sciences, Vol. 107, Issue 29 https://doi.org/10.1073/pnas.1005484107	journal	July 2010
Primary charge separation in the bacterial reaction center: Validity of incoherent sequential model Pudlak, Michal The Journal of Chemical Physics, Vol. 118, Issue 4 https://doi.org/10.1063/1.1531630	journal	January 2003
Role of protein fluctuation correlations in electron transfer in photosynthetic complexes Nesterov, Alexander I.; Berman, Gennady P. Physical Review E, Vol. 91, Issue 4 https://doi.org/10.1103/PhysRevE.91.042702	journal	April 2015
How Quantum Coherence Assists Photosynthetic Light-Harvesting Strümpfer, J.; Şener, M.; Schulten, K. The Journal of Physical Chemistry Letters, Vol. 3, Issue 4 https://doi.org/10.1021/jz201459c	journal	January 2012
A kinetic model of non-photochemical quenching in cyanobacteria Gorbunov, Maxim Y.; Kuzminov, Fedor I.; Fadeev, Victor V. Biochimica et Biophysica Acta (BBA) - Bioenergetics, Vol. 1807, Issue 12 https://doi.org/10.1016/j.bbabio.2011.08.009	journal	December 2011
Coherent Picosecond Exciton Dynamics in a Photosynthetic Reaction Center Westenhoff, Sebastian; Palec̆ek, David; Edlund, Petra Journal of the American Chemical Society, Vol. 134, Issue 40 https://doi.org/10.1021/ja3065478	journal	October 2012
Non-Photochemical Quenching. A Response to Excess Light Energy Müller, Patricia; Li, Xiao-Ping; Niyogi, Krishna K. Plant Physiology, Vol. 125, Issue 4 https://doi.org/10.1104/pp.125.4.1558	journal	April 2001
Structure, Dynamics, and Function in the Major Light-Harvesting Complex of Photosystem II Schlau-Cohen, Gabriela S.; Fleming, Graham R. Australian Journal of Chemistry, Vol. 65, Issue 6 https://doi.org/10.1071/CH12022	journal	January 2012
Antisense Inhibition of the Photosynthetic Antenna Proteins CP29 and CP26: Implications for the Mechanism of Protective Energy Dissipation Andersson, Jenny; Walters, Robin G.; Horton, Peter The Plant Cell, Vol. 13, Issue 5 https://doi.org/10.1105/tpc.13.5.1193	journal	May 2001
Short-term acclimation of the photosynthetic electron transfer chain to changing light: a mathematical model Ebenhöh, Oliver; Fucile, Geoffrey; Finazzi, Giovanni Philosophical Transactions of the Royal Society B: Biological Sciences, Vol. 369, Issue 1640 https://doi.org/10.1098/rstb.2013.0223	journal	April 2014
Arabidopsis Mutants Define a Central Role for the Xanthophyll Cycle in the Regulation of Photosynthetic Energy Conversion Niyogi, Krishna K.; Grossman, Arthur R.; Björkman, Olle The Plant Cell, Vol. 10, Issue 7 https://doi.org/10.1105/tpc.10.7.1121	journal	July 1998
An atypical member of the light-harvesting complex stress-related protein family modulates diatom responses to light Bailleul, B.; Rogato, A.; de Martino, A. Proceedings of the National Academy of Sciences, Vol. 107, Issue 42 https://doi.org/10.1073/pnas.1007703107	journal	October 2010
A kinetic model of rapidly reversible nonphotochemical quenching Zaks, J.; Amarnath, K.; Kramer, D. M. Proceedings of the National Academy of Sciences, Vol. 109, Issue 39 https://doi.org/10.1073/pnas.1211017109	journal	August 2012
Dynamics of quantum systems Rotter, I. Physical Review E, Vol. 64, Issue 3 https://doi.org/10.1103/PhysRevE.64.036213	journal	August 2001
The nature of coherences in the B820 bacteriochlorophyll dimer revealed by two-dimensional electronic spectroscopy Ferretti, Marco; Novoderezhkin, Vladimir I.; Romero, Elisabet Physical Chemistry Chemical Physics, Vol. 16, Issue 21 https://doi.org/10.1039/c3cp54634a	journal	January 2014
Long-range exchange contribution to singlet-singlet energy transfer in a series of rigid bichromophoric molecules Oevering, Henk; Verhoeven, Jan W.; Paddon-Row, Michael N. Chemical Physics Letters, Vol. 143, Issue 5 https://doi.org/10.1016/0009-2614(88)87401-3	journal	January 1988
Dynamics of Light Harvesting in Photosynthesis Cheng, Yuan-Chung; Fleming, Graham R. Annual Review of Physical Chemistry, Vol. 60, Issue 1 https://doi.org/10.1146/annurev.physchem.040808.090259	journal	May 2009
Carotenoid Radical Cations as a Probe for the Molecular Mechanism of Nonphotochemical Quenching in Oxygenic Photosynthesis Amarie, Sergiu; Standfuss, Jörg; Barros, Tiago The Journal of Physical Chemistry B, Vol. 111, Issue 13 https://doi.org/10.1021/jp066458q	journal	April 2007
The photoprotective molecular switch in the photosystem II antenna Ruban, Alexander V.; Johnson, Matthew P.; Duffy, Christopher D. P. Biochimica et Biophysica Acta (BBA) - Bioenergetics, Vol. 1817, Issue 1 https://doi.org/10.1016/j.bbabio.2011.04.007	journal	January 2012
Environment-assisted quantum transport Rebentrost, Patrick; Mohseni, Masoud; Kassal, Ivan New Journal of Physics, Vol. 11, Issue 3 https://doi.org/10.1088/1367-2630/11/3/033003	journal	March 2009
Analysis of LhcSR3, a Protein Essential for Feedback De-Excitation in the Green Alga Chlamydomonas reinhardtii Bonente, Giulia; Ballottari, Matteo; Truong, Thuy B. PLoS Biology, Vol. 9, Issue 1 https://doi.org/10.1371/journal.pbio.1000577	journal	January 2011
Models and measurements of energy-dependent quenching Zaks, Julia; Amarnath, Kapil; Sylak-Glassman, Emily J. Photosynthesis Research, Vol. 116, Issue 2-3 https://doi.org/10.1007/s11120-013-9857-7	journal	June 2013
A Theoretical Investigation of the Photophysical Consequences of Major Plant Light-Harvesting Complex Aggregation within the Photosynthetic Membrane Duffy, C. D. P.; Johnson, M. P.; Macernis, M. The Journal of Physical Chemistry B, Vol. 114, Issue 46 https://doi.org/10.1021/jp106234e	journal	October 2010
Quantum nonequilibrium approach for fast electron transport in open systems: Photosynthetic reaction centers Pudlak, M.; Pichugin, K. N.; Nazmitdinov, R. G. Physical Review E, Vol. 84, Issue 5 https://doi.org/10.1103/PhysRevE.84.051912	journal	November 2011
Berechnung der nat�rlichen Linienbreite auf Grund der Diracschen Lichttheorie Weisskopf, V.; Wigner, E. Zeitschrift f�r Physik, Vol. 63, Issue 1-2 https://doi.org/10.1007/BF01336768	journal	January 1930
Electronic coherence lineshapes reveal hidden excitonic correlations in photosynthetic light harvesting Wong, Cathy Y.; Alvey, Richard M.; Turner, Daniel B. Nature Chemistry, Vol. 4, Issue 5 https://doi.org/10.1038/nchem.1302	journal	March 2012
Quantum Optics Scully, Marlan O.; Zubairy, M. Suhail Cambridge University Press https://doi.org/10.1017/CBO9780511813993	book	January 2012
Fluctuations in Biological and Bioinspired Electron-Transfer Reactions Skourtis, Spiros S.; Waldeck, David H.; Beratan, David N. Annual Review of Physical Chemistry, Vol. 61, Issue 1 https://doi.org/10.1146/annurev.physchem.012809.103436	journal	March 2010
Properties of zeaxanthin and its radical cation bound to the minor light-harvesting complexes CP24, CP26 and CP29 Amarie, Sergiu; Wilk, Laura; Barros, Tiago Biochimica et Biophysica Acta (BBA) - Bioenergetics, Vol. 1787, Issue 6 https://doi.org/10.1016/j.bbabio.2009.02.006	journal	June 2009
Superradiance Transition and Nonphotochemical Quenching in Photosynthetic Complexes Berman, Gennady P.; Nesterov, Alexander I.; López, Gustavo V. The Journal of Physical Chemistry C, Vol. 119, Issue 39 https://doi.org/10.1021/acs.jpcc.5b04455	journal	September 2015
Lessons from nature about solar light harvesting Scholes, Gregory D.; Fleming, Graham R.; Olaya-Castro, Alexandra Nature Chemistry, Vol. 3, Issue 10 https://doi.org/10.1038/nchem.1145	journal	September 2011
Characterisation of triplet states in isolated Photosystem II reaction centres: Oxygen quenching as a mechanism for photodamage Durrant, J. R.; Giorgi, L. B.; Barber, J. Biochimica et Biophysica Acta (BBA) - Bioenergetics, Vol. 1017, Issue 2 https://doi.org/10.1016/0005-2728(90)90148-W	journal	June 1990
Dissipative pathways in the photosystem-II antenna in plants Duffy, Christopher D. P.; Ruban, Alexander V. Journal of Photochemistry and Photobiology B: Biology, Vol. 152 https://doi.org/10.1016/j.jphotobiol.2015.09.011	journal	November 2015
Role of electron-transfer quenching of chlorophyll fluorescence by carotenoids in non-photochemical quenching of green plants Dreuw, A.; Fleming, G. R.; Head-Gordon, M. Biochemical Society Transactions, Vol. 33, Issue 4 https://doi.org/10.1042/BST0330858	journal	August 2005
Characteristic noise features in light transmission across membrane protein undergoing photocycle Das, Anshuman. J.; Mukhopadhyay, Sabyasachi; Narayan, K. S. The Journal of Chemical Physics, Vol. 134, Issue 7 https://doi.org/10.1063/1.3554745	journal	February 2011
Excitation Dynamics in Phycoerythrin 545: Modeling of Steady-State Spectra and Transient Absorption with Modified Redfield Theory Novoderezhkin, Vladimir I.; Doust, Alexander B.; Curutchet, Carles Biophysical Journal, Vol. 99, Issue 2 https://doi.org/10.1016/j.bpj.2010.04.039	journal	July 2010

Similar Records

On improving the performance of nonphotochemical quenching in CP29 light-harvesting antenna complex

Journal Article · Tue Feb 02 00:00:00 EST 2016 · Physics Letters. A · OSTI ID:1304705

Berman, Gennady Petrovich; Nesterov, Alexander I.; Sayre, Richard Thomas; +1 more

Superradiance Transition and Nonphotochemical Quenching in Photosynthetic Complexes

Technical Report · Thu Apr 23 00:00:00 EDT 2015 · OSTI ID:1304705

Berman, Gennady Petrovich; Nesterov, Alexander I.; Lopez, Gustavo V.; +1 more

UV-B photoreceptor-mediated protection of the photosynthetic machinery in Chlamydomonas reinhardtii

Journal Article · Mon Dec 05 00:00:00 EST 2016 · Proceedings of the National Academy of Sciences of the United States of America · OSTI ID:1304705

Allorent, Guillaume; Lefebvre-Legendre, Linnka; Chappuis, Richard; +5 more

Related Subjects

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS
Biological Science

Title: Possible role of interference, protein noise, and sink effects in nonphotochemical quenching in photosynthetic complexes

Citation Formats

References (93)

Similar Records

Related Subjects