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Title: High-quality permanent draft genome sequence of Bradyrhizobium sp. Th.b2, a microsymbiont of Amphicarpaea bracteata collected in Johnson City, New York

Abstract

Bradyrhizobium sp. Th.b2 is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective nitrogen-fixing root nodule of Amphicarpaea bracteata collected in Johnson City, New York. Here we describe the features of Bradyrhizobium sp. Th.b2, together with high-quality permanent draft genome sequence information and annotation. The 10,118,060 high-quality draft genome is arranged in 266 scaffolds of 274 contigs, contains 9,809 protein-coding genes and 108 RNA-only encoding genes. In conclusion, this rhizobial genome was sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) project.

Authors:
 [1];  [2];  [3];  [3];  [4];  [3];  [3];  [3];  [5];  [6];  [7];  [1]
  1. Murdoch Univ. (Australia)
  2. Binghamton Univ., NY (United States)
  3. DOE Joint Genome Inst., Walnut Creek, CA (United States)
  4. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
  5. King Abdulaziz Univ., Jeddah (Saudia Arabia); Jeddah Univ. (Saudi Arabia)
  6. King Abdulaziz Univ., Jeddah (Saudi Arabia)
  7. DOE Joint Genome Inst., Walnut Creek, CA (United States); King Abdulaziz Univ., Jeddah (Saudi Arabia)
Publication Date:
Research Org.:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
OSTI Identifier:
1256912
Grant/Contract Number:  
AC02-05CH11231
Resource Type:
Journal Article: Accepted Manuscript
Journal Name:
Standards in Genomic Sciences
Additional Journal Information:
Journal Volume: 10; Journal Issue: 1; Journal ID: ISSN 1944-3277
Publisher:
BioMed Central
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; Root-nodule bacteria; Nitrogen fixation; Symbiosis; Alphaproteobacteria; GEBA-RNB

Citation Formats

Tian, Rui, Parker, Matthew, Seshadri, Rekha, Reddy, T. B. K., Markowitz, Victor, Ivanova, Natalia, Pati, Amrita, Woyke, Tanja, Baeshen, Mohammed N., Baeshen, Nabih A., Kyrpides, Nikos, and Reeve, Wayne. High-quality permanent draft genome sequence of Bradyrhizobium sp. Th.b2, a microsymbiont of Amphicarpaea bracteata collected in Johnson City, New York. United States: N. p., 2015. Web. doi:10.1186/s40793-015-0008-y.
Tian, Rui, Parker, Matthew, Seshadri, Rekha, Reddy, T. B. K., Markowitz, Victor, Ivanova, Natalia, Pati, Amrita, Woyke, Tanja, Baeshen, Mohammed N., Baeshen, Nabih A., Kyrpides, Nikos, & Reeve, Wayne. High-quality permanent draft genome sequence of Bradyrhizobium sp. Th.b2, a microsymbiont of Amphicarpaea bracteata collected in Johnson City, New York. United States. https://doi.org/10.1186/s40793-015-0008-y
Tian, Rui, Parker, Matthew, Seshadri, Rekha, Reddy, T. B. K., Markowitz, Victor, Ivanova, Natalia, Pati, Amrita, Woyke, Tanja, Baeshen, Mohammed N., Baeshen, Nabih A., Kyrpides, Nikos, and Reeve, Wayne. 2015. "High-quality permanent draft genome sequence of Bradyrhizobium sp. Th.b2, a microsymbiont of Amphicarpaea bracteata collected in Johnson City, New York". United States. https://doi.org/10.1186/s40793-015-0008-y. https://www.osti.gov/servlets/purl/1256912.
@article{osti_1256912,
title = {High-quality permanent draft genome sequence of Bradyrhizobium sp. Th.b2, a microsymbiont of Amphicarpaea bracteata collected in Johnson City, New York},
author = {Tian, Rui and Parker, Matthew and Seshadri, Rekha and Reddy, T. B. K. and Markowitz, Victor and Ivanova, Natalia and Pati, Amrita and Woyke, Tanja and Baeshen, Mohammed N. and Baeshen, Nabih A. and Kyrpides, Nikos and Reeve, Wayne},
abstractNote = {Bradyrhizobium sp. Th.b2 is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective nitrogen-fixing root nodule of Amphicarpaea bracteata collected in Johnson City, New York. Here we describe the features of Bradyrhizobium sp. Th.b2, together with high-quality permanent draft genome sequence information and annotation. The 10,118,060 high-quality draft genome is arranged in 266 scaffolds of 274 contigs, contains 9,809 protein-coding genes and 108 RNA-only encoding genes. In conclusion, this rhizobial genome was sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) project.},
doi = {10.1186/s40793-015-0008-y},
url = {https://www.osti.gov/biblio/1256912}, journal = {Standards in Genomic Sciences},
issn = {1944-3277},
number = 1,
volume = 10,
place = {United States},
year = {Sat May 16 00:00:00 EDT 2015},
month = {Sat May 16 00:00:00 EDT 2015}
}

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Rhizobitoxine production and symbiotic compatibility of Bradyrhizobium from Asian and North American lineages of Amphicarpaea
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