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Title: Compare Gene Profiles

Compare Gene Profiles (CGP) performs pairwise gene content comparisons among a relatively large set of related bacterial genomes. CGP performs pairwise BLAST among gene calls from a set of input genome and associated annotation files, and combines the results to generate lists of common genes, unique genes, homologs, and genes from each genome that differ substantially in length from corresponding genes in the other genomes. CGP is implemented in Python and runs in a Linux environment in serial or parallel mode.
Publication Date:
OSTI Identifier:
Report Number(s):
CGP; 003362WKSTN00
DOE Contract Number:
Software Revision:
Software Package Number:
Software Package Contents:
Media Directory; Software Abstract; Media includes Source Code; / 1 CD-ROM
Software CPU:
Open Source:
Source Code Available:
Research Org:
Lawrence Livermore National Laboratory
Sponsoring Org:
United States Department of Energy
Contributing Orgs:
C. L. Ecale Zhou
Country of Publication:
United States

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