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Title: ProDeGe: A Computational Protocol for fully Automated Decontamination of Genomic Data

The Single Cell Data Decontamination Pipeline is a fully-automated software tool which classifies unscreened contigs from single cell datasets through a combination of homology and feature-based methodologies using the organism's nucleotide sequences and known NCBI taxonomony. The software is freely available to download and install, and can be run on any system.
Publication Date:
OSTI Identifier:
Report Number(s):
R&D Project: KP1605020; 2015-021
DOE Contract Number:
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Software Package Contents:
Open Source Software package available from Lawrence Berkeley National Laboratory at the following URL:
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Source Code Available:
Research Org:
Lawrence Berkeley National Laboratory
Sponsoring Org:
United States Department of Energy
Contributing Orgs:
Evan Andersen, Kristin Tennessen, Amrita Pati
Country of Publication:
United States

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