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Title: Sculpting bespoke mountains: Determining free energies with basis expansions

Journal Article · · The Journal of Chemical Physics
DOI:https://doi.org/10.1063/1.4927147· OSTI ID:1228692
 [1];  [2];  [2];  [3];  [2];  [3]
  1. Department of Chemical and Biomolecular Engineering, University of Notre Dame du Lac, Notre Dame, Indiana 46556, USA
  2. Institute for Molecular Engineering, University of Chicago, Chicago, Illinois 60637, USA
  3. Institute for Molecular Engineering, University of Chicago, Chicago, Illinois 60637, USA, Materials Science Division, Argonne National Laboratory, Argonne, Illinois 60439, USA

Sponsoring Organization:
USDOE
Grant/Contract Number:
AC02-06CH11357
OSTI ID:
1228692
Journal Information:
The Journal of Chemical Physics, Journal Name: The Journal of Chemical Physics Vol. 143 Journal Issue: 4; ISSN 0021-9606
Publisher:
American Institute of PhysicsCopyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 9 works
Citation information provided by
Web of Science

References (46)

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Potential of mean force between a spherical particle suspended in a nematic liquid crystal and a substrate journal October 2002
Sculpting bespoke mountains: Determining free energies with basis expansions journal July 2015
Accelerating flat-histogram methods for potential of mean force calculations journal January 2009
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α-helix to β-hairpin transition of human amylin monomer journal April 2013
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Fast Calculation of the Density of States of a Fluid by Monte Carlo Simulations journal January 2003
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An improved Monte Carlo method for direct calculation of the density of states journal November 2003
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Monte Carlo Simulation Methods for Computing Liquid–Vapor Saturation Properties of Model Systems journal May 2013
Escaping free-energy minima journal September 2002
Free energy calculation from steered molecular dynamics simulations using Jarzynski’s equality journal August 2003
Free energy surface of two- and three-dimensional transitions of Au 12 nanoclusters obtained by ab initio metadynamics journal May 2010
A boundary correction algorithm for metadynamics in multiple dimensions journal August 2013
A Bias-Exchange Approach to Protein Folding journal May 2007
Enhanced Conformational Sampling Using Replica Exchange with Collective-Variable Tempering journal February 2015
Optimization of expanded ensemble methods journal October 2008
Transition-Tempered Metadynamics: Robust, Convergent Metadynamics via On-the-Fly Transition Barrier Estimation journal August 2014

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