The Pacific Northwest National Laboratory library of bacterial and archaeal proteomic biodiversity

Payne, Samuel H.; Monroe, Matthew E.; Overall, Christopher C.; Kiebel, Gary R.; Degan, Michael G.; Gibbons, Bryson C.; Fujimoto, Grant M.; Purvine, Samuel O.; Adkins, Joshua N.; Lipton, Mary S.; Smith, Richard D.

doi:10.1038/sdata.2015.41

Title: The Pacific Northwest National Laboratory library of bacterial and archaeal proteomic biodiversity

Journal Article · Tue Aug 18 00:00:00 EDT 2015 · Scientific Data, 2:Art. No. 150041

DOI:https://doi.org/10.1038/sdata.2015.41· OSTI ID:1213004

Payne, Samuel H. ^[1]; Monroe, Matthew E. ^[1]; Overall, Christopher C. ^[1]; Kiebel, Gary R. ^[1]; Degan, Michael G. ^[1]; Gibbons, Bryson C. ^[1]; Fujimoto, Grant M. ^[1]; Purvine, Samuel O. ^[2]; Adkins, Joshua N. ^[1]; Lipton, Mary S. ^[1]; Smith, Richard D. ^[1]

Pacific Northwest National Lab. (PNNL), Richland, WA (United States). Biological Sciences Division
Pacific Northwest National Lab. (PNNL), Richland, WA (United States). Environmental Molecular Science Laboratory

This dataset deposition announces the submission to public repositories of the PNNL Biodiversity Library, a large collection of global proteomics data for 112 bacterial and archaeal organisms. The data comprises 35,162 tandem mass spectrometry (MS/MS) datasets from ~10 years of research. All data has been searched, annotated and organized in a consistent manner to promote reuse by the community. Protein identifications were cross-referenced with KEGG functional annotations which allows for pathway oriented investigation. We present the data as a freely available community resource. A variety of data re-use options are described for computational modeling, proteomics assay design and bioengineering. Instrument data and analysis files are available at ProteomeXchange via the MassIVE partner repository under the identifiers PXD001860 and MSV000079053.

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Research Organization:: Pacific Northwest National Laboratory (PNNL), Richland, WA (United States). Environmental Molecular Sciences Laboratory (EMSL)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER)

Grant/Contract Number:: AC05-76RL01830

OSTI ID:: 1213004

Report Number(s):: PNNL-SA-108944; 48582; KP1601010

Journal Information:: Scientific Data, 2:Art. No. 150041, Journal Name: Scientific Data, 2:Art. No. 150041

Country of Publication:: United States

Language:: English

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Cited by: 10 works

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A rapid methods development workflow for high-throughput quantitative proteomic applications Chen, Yan; Vu, Jonathan; Thompson, Mitchell G. PLOS ONE, Vol. 14, Issue 2 https://doi.org/10.1371/journal.pone.0211582	journal	February 2019
Fast Open Modification Spectral Library Searching Through Approximate Nearest Neighbor Indexing Bittremieux, Wout; Meysman, Pieter; Noble, William Stafford Zenodo https://doi.org/10.5281/zenodo.1418398	text	January 2018
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