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Title: Genomics in a changing arctic: critical questions await the molecular ecologist

Journal Article · · Molecular Ecology
DOI:https://doi.org/10.1111/mec.13166· OSTI ID:1185947
 [1];  [2];  [1];  [3];  [4];  [5];  [6];  [7]
  1. Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). Climate Change Science Inst., Environmental Sciences Division
  2. University of Alaska Fairbanks, Fairbanks AK (United States). International Arctic Research Center
  3. Texas Tech Univ., Lubbock, TX (United States). Dept. of Biological Sciences
  4. Swedish Univ. of Agricultural Sciences (SLU), Umea (Sweden). Dept. of Forest Ecology and Management; Swedish Univ. of Agricultural Sciences (SLU), Umea (Sweden). Umea Plant Science Centre, Dept. of Forest Genetics and Plant Physiology
  5. Swedish Univ. of Agricultural Sciences (SLU), Umea (Sweden). Umea Plant Science Centre, Dept. of Forest Genetics and Plant Physiology
  6. Colorado State Univ., Fort Collins, CO (United States). Dept. of Ecosystem Science and Sustainability; Colorado State Univ., Fort Collins, CO (United States). Natural Resource Ecology Lab.
  7. Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). Biosciences Division

Molecular ecology is poised to tackle a host of interesting questions in the coming years. Of particular importance to the molecular ecologist are new technologies and analytical approaches that provide opportunities to address questions previously unapproachable.The Arctic provides a unique and rapidly changing environment with a suite of emerging research needs that can be addressed through genetics and genomics. Here we highlight recent research on boreal and tundra ecosystems and put forth a series of questions related to plant and microbial responses to climate change that can benefit from technologies and analytical approaches contained within the molecular ecologist's toolbox. These questions include understanding (i) the mechanisms of plant acquisition and uptake of N in cold soils, (ii) how these processes are mediated by root traits, (iii) the role played by the plant microbiome in cycling C and nutrients within high-latitude ecosystems and (iv) plant adaptation to extreme Arctic climates. We highlight how contributions can be made in these areas through studies that target model and nonmodel organisms and emphasize that the sequencing of the Populus and Salix genomes provides a valuable resource for scientific discoveries related to the plant microbiome and plant adaptation in the Arctic. Moreover, there exists an exciting role to play in model development, including incorporating genetic and evolutionary knowledge into ecosystem and Earth System Models. In this regard, the molecular ecologist provides a valuable perspective on plant genetics as a driver for community biodiversity, and how ecological and evolutionary forces govern community dynamics in a rapidly changing climate.

Research Organization:
Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER); National Science Foundation (NSF)
Grant/Contract Number:
AC05-00OR22725; SC0010568; 1255228
OSTI ID:
1185947
Alternate ID(s):
OSTI ID: 1401616
Journal Information:
Molecular Ecology, Vol. 24, Issue 10; ISSN 0962-1083
Publisher:
WileyCopyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 7 works
Citation information provided by
Web of Science

References (109)

Microorganisms and climate change: terrestrial feedbacks and mitigation options journal October 2010
Methanotrophic symbionts provide carbon for photosynthesis in peat bogs journal August 2005
The below-ground perspective of forest plants: soil provides mainly organic nitrogen for plants and mycorrhizal fungi: Rapid report journal May 2012
Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw journal November 2011
Symbiotic sequencing for the Populus mesocosm journal February 2004
High biological species diversity in the arctic flora journal January 2006
Populus Community Mega-Genomics: Coming of Age journal October 2009
The unseen iceberg: plant roots in arctic tundra journal September 2014
Uptake of organic nitrogen by plants: Tansley review journal February 2009
Are there evolutionary consequences of plant-soil feedbacks along soil gradients? journal January 2014
Productivity and Nutrient Cycling of Alaskan Tundra: Enhancement by Flowing Soil Water journal June 1988
Bacterial and fungal community structure in Arctic tundra tussock and shrub soils: Community structure in Arctic tundra tussock and shrub soils journal February 2007
Rapid responses of soil microorganisms improve plant fitness in novel environments journal August 2012
Foliar and soil nutrients in tundra on glacial landscapes of contrasting ages in northern Alaska journal May 2002
Adaptive versus non-adaptive phenotypic plasticity and the potential for contemporary adaptation in new environments journal June 2007
Boreal forest plants take up organic nitrogen journal April 1998
Arabidopsis LHT1 Is a High-Affinity Transporter for Cellular Amino Acid Uptake in Both Root Epidermis and Leaf Mesophyll journal June 2006
Ecotypic Differentiation of Growth Processes in Carex Aquatilis along Latitudinal and Local Gradients journal August 1981
Characterization of an Amino Acid Permease from the Endomycorrhizal Fungus Glomus mosseae journal March 2008
Fifty thousand years of Arctic vegetation and megafaunal diet journal February 2014
AtPTR1 and AtPTR5 Transport Dipeptides in Planta journal August 2008
Nitrogen Cycling and the Spread of Shrubs Control Changes in the Carbon Balance of Arctic Tundra Ecosystems journal January 2005
Long-term warming alters the composition of Arctic soil microbial communities journal April 2012
Are ectomycorrhizal fungi alleviating or aggravating nitrogen limitation of tree growth in boreal forests? journal January 2013
Experimental Ecology of Dryas Octopetala Ecotypes: I. Ecotypic Differentiation and Life-Cycle Stages of Selection journal November 1983
The willow genome and divergent evolution from poplar after the common genome duplication journal July 2014
Cross-biome metagenomic analyses of soil microbial communities and their functional attributes journal December 2012
Bioenergy from plants and the sustainable yield challenge journal July 2008
Home site advantage in two long-lived arctic plant species: results from two 30-year reciprocal transplant studies journal May 2012
The Circumpolar Arctic vegetation map journal February 2005
Nitrogen acquisition by roots: physiological and developmental mechanisms ensuring plant adaptation to a fluctuating resource journal February 2013
BAT1, a bidirectional amino acid transporter in Arabidopsis journal February 2009
Genetic roadmap of the Arctic: plant dispersal highways, traffic barriers and capitals of diversity journal July 2013
Root uptake of cationic amino acids by Arabidopsis depends on functional expression of amino acid permease 5 journal November 2008
Growth and Flowering in Eriophorum Vaginatum: Annual and Latitudinal Variation journal December 1986
Evolutionary relationships in Oxytropis species, as estimated from the nuclear ribosomal internal transcribed spacer (ITS) sequences point to multiple expansions into the Arctic journal August 2012
Integrating empirical-modeling approaches to improve understanding of terrestrial ecology processes: Meetings journal July 2012
Linking Plant Nutritional Status to Plant-Microbe Interactions journal July 2013
Balsam Poplar (<i>Populus balsamifera</i>; Salicaceae) Beyond the Tree Line in the Western Canadian Mainland Arctic (Northwest Territories) journal March 2012
Characterization of a general amino acid permease from Hebeloma cylindrosporum journal August 2002
The Microbe-Free Plant: Fact or Artifact? journal January 2011
Bryophyte-cyanobacteria associations as regulators of the northern latitude carbon balance in response to global change journal March 2013
Evolutionary and plastic responses to climate change in terrestrial plant populations journal October 2013
Arctic Landscapes in Transition: Responses to Thawing Permafrost journal June 2010
Morphological and Physiological Mechanisms of Temperature Compensation in Phosphate Absorption along a Latitudinal Gradient journal November 1974
N2-fixation by methanotrophs sustains carbon and nitrogen accumulation in pristine peatlands journal August 2014
Patterns of Plant Biomass Partitioning Depend on Nitrogen Source journal April 2011
Photosynthesis, Respiration, and Phosphate Absorption by Carex Aquatilis Ecotypes along Latitudinal and Local Environmental Gradients journal August 1983
Mycorrhizal community structure, microbial biomass P and phosphatase activities under Salix polaris as influenced by nutrient availability journal March 2009
Tipping elements in the Earth's climate system journal February 2008
Terrestrial ecosystem carbon dynamics and climate feedbacks journal January 2008
Untargeted soil metabolomics methods for analysis of extractable organic matter journal January 2015
Adaptation, migration or extirpation: climate change outcomes for tree populations: Climate change outcomes for tree populations journal January 2008
The nature of spatial transitions in the Arctic journal December 2004
Ecological and Evolutionary Responses to Recent Climate Change journal December 2006
Impact of fire on active layer and permafrost microbial communities and metagenomes in an upland Alaskan boreal forest journal April 2014
The fragmented nature of tundra landscape journal April 2014
Vulnerability of Permafrost Carbon to Climate Change: Implications for the Global Carbon Cycle journal September 2008
A gene repertoire for nitrogen transporters in Laccaria bicolor journal October 2008
Preferential use of organic nitrogen for growth by a non-mycorrhizal arctic sedge journal January 1993
Properties of bacterial endophytes and their proposed role in plant growth journal October 2008
Role of vernalization and of duplicated FLOWERING LOCUS C in the perennial Arabidopsis lyrata journal October 2012
Ecotypic differentiation in photosynthesis and growth of Eriophorum vaginatum along a latitudinal gradient in the Arctic tundra journal August 2014
Biogeochemical Diversity Along a Riverside Toposequence in Arctic Alaska journal February 1991
Vascular plant success in a warming Antarctic may be due to efficient nitrogen acquisition journal March 2011
Cold climate plants in a warmer world journal November 2008
Global prevalence of methane oxidation by symbiotic bacteria in peat-moss ecosystems journal August 2010
Balsam poplar (Populus balsamifera L.) communities on the Arctic Slope of Alaska [Balsam poplar (Populus balsamifera L.) communities on the Arctic Slope of Alaska] journal March 2014
Soil bacterial community composition altered by increased nutrient availability in Arctic tundra soils journal October 2014
Plants can use protein as a nitrogen source without assistance from other organisms journal March 2008
Responses in Microbes and Plants to Changed Temperature, Nutrient, and Light Regimes in the Arctic journal September 1999
Peatland succession induces a shift in the community composition of Sphagnum -associated active methanotrophs journal April 2014
Cultivation of Norway spruce and Scots pine on organic nitrogen improves seedling morphology and field performance journal July 2012
Tundra Plant Uptake of Amino Acid and NH 4 + Nitrogen in Situ: Plants Complete Well for Amino Acid N journal October 1996
Trajectory of the Arctic as an integrated system journal December 2013
Nitrogenase Activity in Relation to Intracellular Organisms in Sphagnum Mosses journal January 1976
Utilization of organic nitrogen by ectomycorrhizal fungi (Hebeloma spp.) of arctic and temperate origin journal December 1998
Polyploidy in arctic plants: POLYPLOIDY IN ARCTIC PLANTS journal August 2004
Forests on thawing permafrost: fragmentation, edge effects, and net forest loss journal January 2014
Nitrogen Mineralization in a Tussock Tundra Soil journal November 1982
Response of plants to ectomycorrhizae in N-limited conditions: which factors determine its variation? journal August 2008
Local Adaptation in the Flowering-Time Gene Network of Balsam Poplar, Populus balsamifera L. journal April 2012
Amino Acid Absorption by Arctic Plants: Implications for Plant Nutrition and Nitrogen Cycling journal December 1994
Ten years of transcriptomics in wild populations: what have we learned about their ecology and evolution? journal January 2015
PEP1 regulates perennial flowering in Arabis alpina journal April 2009
Microbial metaproteomics: identifying the repertoire of proteins that microorganisms use to compete and cooperate in complex environmental communities journal June 2012
The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray) journal September 2006
Resource-based niches provide a basis for plant species diversity and dominance in arctic tundra journal January 2002
CO/FT Regulatory Module Controls Timing of Flowering and Seasonal Growth Cessation in Trees journal May 2006
Life Histories of Tillers of Eriophorum Vaginatum in Relation to Tundra Disturbance journal March 1983
Isolation and characterization of a general amino acid permease from the ectomycorrhizal fungus Amanita muscaria journal November 1999
Global Hydrological Cycles and World Water Resources journal August 2006
Uptake, allocation and signaling of nitrate journal August 2012
AAP1 transports uncharged amino acids into roots of Arabidopsis: Amino acid uptake by the root journal April 2007
The rhizosphere microbiome and plant health journal August 2012
Drawing ecological inferences from coincident patterns of population- and community-level biodiversity journal May 2014
Climate-driven local adaptation of ecophysiology and phenology in balsam poplar, Populus balsamifera L. (Salicaceae) journal January 2011
Frequent Long-Distance Plant Colonization in the Changing Arctic journal June 2007
Genetic consequences of climate change for northern plants journal December 2011
Comparative Physiological Ecology of Arctic and Alpine Populations of Oxyria digyna journal January 1961
Forests trapped in nitrogen limitation - an ecological market perspective on ectomycorrhizal symbiosis journal May 2014
The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes journal September 2008
Control of Net Uptake of Nutrients by Regulation of Influx in Barley Plants Recovering from Nutrient Deficiency journal September 1993
Food Security: The Challenge of Feeding 9 Billion People journal January 2010
The adaptive potential of Populus balsamifera L. to phenology requirements in a warmer global climate journal October 2012
Chloroplast DNA variation and postglacial recolonization of common ash (Fraxinus excelsior L.) in Europe: FRAXINUS EXCELSIOR PHYLOGEOGRAPHY journal October 2004
The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes journal September 2008
Why Breeding time has not Responded to Selection for Earlier Breeding in a Songbird Population journal November 2006
Molecular investigations into a globally important carbon pool: permafrost-protected carbon in Alaskan soils journal February 2010

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