Algal functional annotation tool
Abstract
The Algal Functional Annotation Tool is a web-based comprehensive analysis suite integrating annotation data from several pathway, ontology, and protein family databases. The current version provides annotation for the model alga Chlamydomonas reinhardtii, and in the future will include additional genomes. The site allows users to interpret large gene lists by identifying associated functional terms, and their enrichment. Additionally, expression data for several experimental conditions were compiled and analyzed to provide an expression-based enrichment search. A tool to search for functionally-related genes based on gene expression across these conditions is also provided. Other features include dynamic visualization of genes on KEGG pathway maps and batch gene identifier conversion.
- Authors:
-
- UCLA
- Publication Date:
- Research Org.:
- Univ. of California, Los Angeles, CA (United States)
- Sponsoring Org.:
- USDOE Office of Energy Efficiency and Renewable Energy (EERE)
- OSTI Identifier:
- 1096239
- Report Number(s):
- DOE-DANF-0003046-R1
28302-R
- DOE Contract Number:
- EE0003046
- Resource Type:
- Other
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 09 BIOMASS FUELS; Algal functional annotation tool
Citation Formats
Lopez, D., Casero, D., Cokus, S. J., Merchant, S. S., and Pellegrini, M. Algal functional annotation tool. United States: N. p., 2012.
Web.
Lopez, D., Casero, D., Cokus, S. J., Merchant, S. S., & Pellegrini, M. Algal functional annotation tool. United States.
Lopez, D., Casero, D., Cokus, S. J., Merchant, S. S., and Pellegrini, M. 2012.
"Algal functional annotation tool". United States.
@article{osti_1096239,
title = {Algal functional annotation tool},
author = {Lopez, D. and Casero, D. and Cokus, S. J. and Merchant, S. S. and Pellegrini, M.},
abstractNote = {The Algal Functional Annotation Tool is a web-based comprehensive analysis suite integrating annotation data from several pathway, ontology, and protein family databases. The current version provides annotation for the model alga Chlamydomonas reinhardtii, and in the future will include additional genomes. The site allows users to interpret large gene lists by identifying associated functional terms, and their enrichment. Additionally, expression data for several experimental conditions were compiled and analyzed to provide an expression-based enrichment search. A tool to search for functionally-related genes based on gene expression across these conditions is also provided. Other features include dynamic visualization of genes on KEGG pathway maps and batch gene identifier conversion.},
doi = {},
url = {https://www.osti.gov/biblio/1096239},
journal = {},
number = ,
volume = ,
place = {United States},
year = {Sun Jul 01 00:00:00 EDT 2012},
month = {Sun Jul 01 00:00:00 EDT 2012}
}