Draft Genome Sequence of Pseudoalteromonas sp. Strain ND6B, an Oil-Degrading Isolate from Eastern Mediterranean Sea Water Collected at a Depth of 1,210 Meters

Harris, Austin P.; Techtmann, Stephen M.; Stelling, Savannah C.; Utturkar, Sagar M.; Alshibli, Noor K.; Brown, Steven D.; Hazen, Terry C.

doi:10.1128/genomeA.01212-14

Title: Draft Genome Sequence of Pseudoalteromonas sp. Strain ND6B, an Oil-Degrading Isolate from Eastern Mediterranean Sea Water Collected at a Depth of 1,210 Meters

Abstract

We report the draft genome of Pseudoalteromonas sp. strain ND6B, which is able to grow with crude oil as a carbon source. Strain ND6B was isolated from eastern Mediterranean Sea deep water at a depth of 1,210 m. The genome of strain ND6B provides insight into the oil-degrading ability of the Pseudoalteromonas species.

Authors:

Harris, Austin P. ^[1]; Techtmann, Stephen M. ^[1]; Stelling, Savannah C. ^[1]; Utturkar, Sagar M. ^[2]; Alshibli, Noor K. ^[1]; Brown, Steven D. ^[1]; Hazen, Terry C. ^[3]

Univ. of Tennessee, Knoxville, TN (United States). Dept. of Civil and Environmental Engineering; Univ. of Tennessee, Knoxville, TN (United States). Center for Environmental Biotechnology
Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). Biosciences Division; Univ. of Tennessee, Knoxville, TN (United States). Graduate School of Genome Science and Technology
Univ. of Tennessee, Knoxville, TN (United States). Dept. of Civil and Environmental Engineering; Univ. of Tennessee, Knoxville, TN (United States). Center for Environmental Biotechnology; Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). Biosciences Division

Publication Date:: Wed Nov 26 00:00:00 EST 2014

Research Org.:: Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)

Sponsoring Org.:: USDOE Office of Science (SC)

OSTI Identifier:: 1286797

Grant/Contract Number:: AC05-00OR22725; A13-0119-001

Resource Type:: Accepted Manuscript

Journal Name:: Genome Announcements

Additional Journal Information:: Journal Volume: 2; Journal Issue: 6; Journal ID: ISSN 2169-8287

Publisher:: American Society for Microbiology

Country of Publication:: United States

Language:: English

Subject:: 59 BASIC BIOLOGICAL SCIENCES; 54 ENVIRONMENTAL SCIENCES; 02 PETROLEUM; ND6B; Oil-degrading; Gammaproteobacteria; Pseudoalteromonas; Deepwater Horizon Oil Spill; Eastern Mediterranean Sea

Citation Formats


                    Harris, Austin P., Techtmann, Stephen M., Stelling, Savannah C., Utturkar, Sagar M., Alshibli, Noor K., Brown, Steven D., and Hazen, Terry C. Draft Genome Sequence of Pseudoalteromonas sp. Strain ND6B, an Oil-Degrading Isolate from Eastern Mediterranean Sea Water Collected at a Depth of 1,210 Meters.  United States: N. p., 2014. 
Web.  doi:10.1128/genomeA.01212-14.

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                    Harris, Austin P., Techtmann, Stephen M., Stelling, Savannah C., Utturkar, Sagar M., Alshibli, Noor K., Brown, Steven D., & Hazen, Terry C. Draft Genome Sequence of Pseudoalteromonas sp. Strain ND6B, an Oil-Degrading Isolate from Eastern Mediterranean Sea Water Collected at a Depth of 1,210 Meters.  United States.  https://doi.org/10.1128/genomeA.01212-14

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                    Harris, Austin P., Techtmann, Stephen M., Stelling, Savannah C., Utturkar, Sagar M., Alshibli, Noor K., Brown, Steven D., and Hazen, Terry C. Wed .  
"Draft Genome Sequence of Pseudoalteromonas sp. Strain ND6B, an Oil-Degrading Isolate from Eastern Mediterranean Sea Water Collected at a Depth of 1,210 Meters".  United States.  https://doi.org/10.1128/genomeA.01212-14.  https://www.osti.gov/servlets/purl/1286797.

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@article{osti_1286797,

  title        = {Draft Genome Sequence of Pseudoalteromonas sp. Strain ND6B, an Oil-Degrading Isolate from Eastern Mediterranean Sea Water Collected at a Depth of 1,210 Meters},

  author       = {Harris, Austin P. and Techtmann, Stephen M. and Stelling, Savannah C. and Utturkar, Sagar M. and Alshibli, Noor K. and Brown, Steven D. and Hazen, Terry C.},

  abstractNote = {We report the draft genome of Pseudoalteromonas sp. strain ND6B, which is able to grow with crude oil as a carbon source. Strain ND6B was isolated from eastern Mediterranean Sea deep water at a depth of 1,210 m. The genome of strain ND6B provides insight into the oil-degrading ability of the Pseudoalteromonas species.},

  doi          = {10.1128/genomeA.01212-14},

  journal      = {Genome Announcements},

  number       = 6,

  volume       = 2,

  place        = {United States},

  year         = {Wed Nov 26 00:00:00 EST 2014},

  month        = {Wed Nov 26 00:00:00 EST 2014}

}

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Works referenced in this record:

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Hydrocarbon-degrading bacteria enriched by the Deepwater Horizon oil spill identified by cultivation and DNA-SIP
journal, June 2013

Gutierrez, Tony; Singleton, David R.; Berry, David
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BMC Bioinformatics, Vol. 11, Issue 1
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Evaluation and validation of de novo and hybrid assembly techniques to derive high-quality genome sequences
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Utturkar, Sagar M.; Klingeman, Dawn M.; Land, Miriam L.
Bioinformatics, Vol. 30, Issue 19
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Similar Records

Title: Draft Genome Sequence of Pseudoalteromonas sp. Strain ND6B, an Oil-Degrading Isolate from Eastern Mediterranean Sea Water Collected at a Depth of 1,210 Meters

Abstract

Citation Formats

Marine microorganisms make a meal of oil journal, March 2006

Comparative genomics reveals a deep-sea sediment-adapted life style of Pseudoalteromonas sp. SM9913 journal, August 2010

Obligate oil-degrading marine bacteria journal, June 2007

Cycloclasticus pugetii gen. nov., sp. nov., an Aromatic Hydrocarbon-Degrading Bacterium from Marine Sediments journal, January 1995

ABySS: A parallel assembler for short read sequence data journal, February 2009

Succession of Hydrocarbon-Degrading Bacteria in the Aftermath of the Deepwater Horizon Oil Spill in the Gulf of Mexico journal, September 2013

Hydrocarbon-degrading bacteria enriched by the Deepwater Horizon oil spill identified by cultivation and DNA-SIP journal, June 2013

Trimmomatic: a flexible trimmer for Illumina sequence data journal, April 2014

Prodigal: prokaryotic gene recognition and translation initiation site identification journal, March 2010

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Marine microorganisms make a meal of oil
journal, March 2006

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journal, August 2010

Obligate oil-degrading marine bacteria
journal, June 2007

Cycloclasticus pugetii gen. nov., sp. nov., an Aromatic Hydrocarbon-Degrading Bacterium from Marine Sediments
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Hydrocarbon-degrading bacteria enriched by the Deepwater Horizon oil spill identified by cultivation and DNA-SIP
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Trimmomatic: a flexible trimmer for Illumina sequence data
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Prodigal: prokaryotic gene recognition and translation initiation site identification
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Evaluation and validation of de novo and hybrid assembly techniques to derive high-quality genome sequences
journal, June 2014