Functionalized Buckyballs for Visualizing Microbial Species in Different States and Environments
Abstract
To date, in situ visualization of microbial density has remained an open problem. Here, functionalized buckyballs (e.g., C60-pyrrolidine tris acid) are shown to be a versatile platform that allows internalization within a microorganism without either adhering to the cell wall and cell membrane or binding to a matrix substrate such as soil. These molecular probes are validated via multi-scale imaging, to show association with microorganisms via fluorescence microscopy, positive cellular uptake via electron microscopy, and non-specific binding to the substrates through a combination of fluorescence and autoradiography imaging. In conclusion, we also demonstrate that cysteine-functionalized C60- pyrrolidine tris acid can differentiate live and dead microorganisms.
- Authors:
-
- Univ. of Nevada, Reno, NV (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
- Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
- Brookhaven National Lab. (BNL), Upton, NY (United States)
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER)
- OSTI Identifier:
- 1255532
- Grant/Contract Number:
- AC02-05CH11231
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Scientific Reports
- Additional Journal Information:
- Journal Volume: 5; Journal ID: ISSN 2045-2322
- Publisher:
- Nature Publishing Group
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES
Citation Formats
Cheng, Qingsu, Aravind, Ashwin, Buckley, Matthew, Gifford, Andrew, and Parvin, Bahram. Functionalized Buckyballs for Visualizing Microbial Species in Different States and Environments. United States: N. p., 2015.
Web. doi:10.1038/srep13685.
Cheng, Qingsu, Aravind, Ashwin, Buckley, Matthew, Gifford, Andrew, & Parvin, Bahram. Functionalized Buckyballs for Visualizing Microbial Species in Different States and Environments. United States. https://doi.org/10.1038/srep13685
Cheng, Qingsu, Aravind, Ashwin, Buckley, Matthew, Gifford, Andrew, and Parvin, Bahram. Tue .
"Functionalized Buckyballs for Visualizing Microbial Species in Different States and Environments". United States. https://doi.org/10.1038/srep13685. https://www.osti.gov/servlets/purl/1255532.
@article{osti_1255532,
title = {Functionalized Buckyballs for Visualizing Microbial Species in Different States and Environments},
author = {Cheng, Qingsu and Aravind, Ashwin and Buckley, Matthew and Gifford, Andrew and Parvin, Bahram},
abstractNote = {To date, in situ visualization of microbial density has remained an open problem. Here, functionalized buckyballs (e.g., C60-pyrrolidine tris acid) are shown to be a versatile platform that allows internalization within a microorganism without either adhering to the cell wall and cell membrane or binding to a matrix substrate such as soil. These molecular probes are validated via multi-scale imaging, to show association with microorganisms via fluorescence microscopy, positive cellular uptake via electron microscopy, and non-specific binding to the substrates through a combination of fluorescence and autoradiography imaging. In conclusion, we also demonstrate that cysteine-functionalized C60- pyrrolidine tris acid can differentiate live and dead microorganisms.},
doi = {10.1038/srep13685},
journal = {Scientific Reports},
number = ,
volume = 5,
place = {United States},
year = {Tue Sep 08 00:00:00 EDT 2015},
month = {Tue Sep 08 00:00:00 EDT 2015}
}
Web of Science
Works referenced in this record:
Interactions and Self-Organization in the Soil-Microbe Complex
journal, June 2004
- Young, I. M.
- Science, Vol. 304, Issue 5677
The value of the world's ecosystem services and natural capital
journal, May 1997
- Costanza, Robert; d'Arge, Ralph; de Groot, Rudolf
- Nature, Vol. 387, Issue 6630
The effect of dissolved oxygen on N 2 O production by ammonia-oxidizing bacteria in an enriched nitrifying sludge
journal, December 2014
- Peng, Lai; Ni, Bing-Jie; Erler, Dirk
- Water Research, Vol. 66
Plant growth promotion in cereal and leguminous agricultural important plants: From microorganism capacities to crop production
journal, May 2014
- Pérez-Montaño, F.; Alías-Villegas, C.; Bellogín, R. A.
- Microbiological Research, Vol. 169, Issue 5-6
Organic matter–microorganism–plant in soil bioremediation: a synergic approach
journal, April 2013
- Masciandaro, G.; Macci, C.; Peruzzi, E.
- Reviews in Environmental Science and Bio/Technology, Vol. 12, Issue 4
Proteomic Analysis of Carbon Concentrating Chemolithotrophic Bacteria Serratia sp. for Sequestration of Carbon Dioxide
journal, March 2014
- Bharti, Randhir K.; Srivastava, Shaili; Thakur, Indu Shekhar
- PLoS ONE, Vol. 9, Issue 3
A synopsis of symbiotic nitrogen fixation and other apparently similar host‐microorganism interactions
journal, January 1979
- Smittle, D. A.
- Journal of Plant Nutrition, Vol. 1, Issue 4
Comparison of phosphite application methods for control of Phytophthora cinnamomi in threatened communities
journal, November 2013
- Crane, C. E.; Shearer, B. L.
- Australasian Plant Pathology, Vol. 43, Issue 2
Time course studies of temperature and soil depth mediated sporangium production by Phytophthora cinnamomi
journal, December 2013
- Shearer, B. L.
- Australasian Plant Pathology, Vol. 43, Issue 3
Identifying variation in resistance to the take-all fungus, Gaeumannomyces graminis var. tritici, between different ancestral and modern wheat species
journal, August 2014
- McMillan, Vanessa E.; Gutteridge, Richard J.; Hammond-Kosack, Kim E.
- BMC Plant Biology, Vol. 14, Issue 1
Collateral effects of antibiotics on mammalian gut microbiomes
journal, September 2012
- Looft, Torey; Allen, Heather K.
- Gut Microbes, Vol. 3, Issue 5
The role of root Exudates in Rhizosphere Interactions with Plants and Other Organisms
journal, June 2006
- Bais, Harsh P.; Weir, Tiffany L.; Perry, Laura G.
- Annual Review of Plant Biology, Vol. 57, Issue 1
Fungal growth promotor endophytes: a pragmatic approach towards sustainable food and agriculture
journal, February 2014
- Rai, Mahendra; Rathod, Dnyaneshwar; Agarkar, Gauravi
- Symbiosis, Vol. 62, Issue 2
Biological soil crusts as an integral component of desert environments
journal, May 2013
- Belnap, Jayne; Weber, Bettina
- Ecological Processes, Vol. 2, Issue 1
Biological Soil Crust Rehabilitation in Theory and Practice: An Underexploited Opportunity
journal, March 2007
- Bowker, Matthew A.
- Restoration Ecology, Vol. 15, Issue 1
A molecular method for the delivery of small molecules and proteins across the cell wall of algae using molecular transporters
journal, July 2012
- Hyman, J. M.; Geihe, E. I.; Trantow, B. M.
- Proceedings of the National Academy of Sciences, Vol. 109, Issue 33
Advanced transfection with Lipofectamine 2000 reagent: primary neurons, siRNA, and high-throughput applications
journal, June 2004
- Dalby, B.
- Methods, Vol. 33, Issue 2
Non-invasive imaging of roots with high resolution X-ray micro-tomography
journal, August 2003
- Gregory, P. J.; Hutchison, D. J.; Read, D. B.
- Plant and Soil, Vol. 255, Issue 1
NMR imaging shows water distribution and transport in plant root systems in situ
journal, January 1986
- Bottomley, P. A.; Rogers, H. H.; Foster, T. H.
- Proceedings of the National Academy of Sciences, Vol. 83, Issue 1
Antioxidant responses in the polychaete Perinereis gualpensis (Nereididae) exposed to the carbon nanomaterial fullerene (C 60 )
journal, February 2011
- Díaz-Jaramillo, M.; Ribas, J.; da Rocha, A. M.
- Chemistry and Ecology, Vol. 27, Issue 1
Synthesis and enhanced neuroprotective activity of C60-based ebselen derivatives
journal, March 2007
- Liu, Xu-Feng; Guan, Wen-Chao; Ke, Weng-Shan
- Canadian Journal of Chemistry, Vol. 85, Issue 3
Fullerene Derivative as Anti-HIV Protease Inhibitor: Molecular Modeling and QSAR Approaches
journal, May 2012
- Ibrahim, M.; A. Saleh, N.; M. Elshemey, W.
- Mini-Reviews in Medicinal Chemistry, Vol. 12, Issue 6
InChI-based optimal descriptors: QSAR analysis of fullerene[C60]-based HIV-1 PR inhibitors by correlation balance
journal, April 2010
- Toropov, Andrey A.; Toropova, Alla P.; Benfenati, Emilio
- European Journal of Medicinal Chemistry, Vol. 45, Issue 4
The applications of buckminsterfullerene C 60 and derivatives in orthopaedic research
journal, January 2014
- Liu, Qihai; Cui, Quanjun; Li, Xudong Joshua
- Connective Tissue Research, Vol. 55, Issue 2
Preparation and biodistribution of radiolabeled fullerene C 60 nanocrystals
journal, August 2009
- Nikolić, Nadežda; Vranješ-Ðurić, Sanja; Janković, Drina
- Nanotechnology, Vol. 20, Issue 38
Fullerene derivatives: an attractive tool for biological applications
journal, November 2003
- Bosi, Susanna; Da Ros, Tatiana; Spalluto, Giampiero
- European Journal of Medicinal Chemistry, Vol. 38, Issue 11-12
Synthesis of Donor−Acceptor Multiblock Copolymers Incorporating Fullerene Backbone Repeat Units
journal, July 2010
- Hiorns, Roger C.; Cloutet, Eric; Ibarboure, Emmanuel
- Macromolecules, Vol. 43, Issue 14
Synthesis of carbon 'onions' in water
journal, November 2001
- Sano, N.; Wang, H.; Chhowalla, M.
- Nature, Vol. 414, Issue 6863
Structures and Stabilities of Rings Composed of C20 Cages
journal, January 2007
- Liu, Ying; Wang, Guo; Huang, Yuanhe
- MATERIALS TRANSACTIONS, Vol. 48, Issue 4
Structures and stabilities of C60-rings
journal, March 2001
- Li, Yuxue; Huang, Yuanhe; Du, Shixuan
- Chemical Physics Letters, Vol. 335, Issue 5-6
A Method for the High Efficiency of Water-Soluble Carbodiimide-Mediated Amidation
journal, April 1994
- Sehgal, D.; Vijay, I. K.
- Analytical Biochemistry, Vol. 218, Issue 1
A Strategy for the Generation of Surfaces Presenting Ligands for Studies of Binding Based on an Active Ester as a Common Reactive Intermediate: A Surface Plasmon Resonance Study
journal, February 1999
- Lahiri, Joydeep; Isaacs, Lyle; Tien, Joe
- Analytical Chemistry, Vol. 71, Issue 4
Reduced nonspecific adsorption on covalently immobilized protein surfaces using poly(ethylene oxide) containing blocking agents
journal, January 2004
- Frederix, Filip; Bonroy, Kristien; Reekmans, Gunter
- Journal of Biochemical and Biophysical Methods, Vol. 58, Issue 1
PLGA-Carbon Nanotube Conjugates for Intercellular Delivery of Caspase-3 into Osteosarcoma Cells
journal, December 2013
- Cheng, Qingsu; Blais, Marc-Olivier; Harris, Greg
- PLoS ONE, Vol. 8, Issue 12
Rapid methylation on carbon frameworks useful for the synthesis of 11CH3-incorporated PET tracers: Pd(0)-mediated rapid coupling of methyl iodide with an alkenyltributylstannane leading to a 1-methylalkene
journal, January 2006
- Hosoya, Takamitsu; Sumi, Kengo; Doi, Hisashi
- Organic & Biomolecular Chemistry, Vol. 4, Issue 3
Considered novel aromatic systems. 11. Diamagnetic polyanions of the C60 and C70 fullerenes: preparation, 13C and 7Li NMR spectroscopic observation, and alkylation with methyl iodide to polymethylated fullerenes
journal, April 1991
- Bausch, Joseph W.; Prakash, G. K. Surya; Olah, George A.
- Journal of the American Chemical Society, Vol. 113, Issue 8
The methylation of some phenols and alcohols with sodium hydride / methyl iodide in tetrahydrofuran at room temperature
journal, January 1973
- Stoochnoff, Barbara A.; Benoiton, N. Leo
- Tetrahedron Letters, Vol. 14, Issue 1
A Stereocontrolled Synthesis of δ- trans -Tocotrienoloic Acid
journal, September 2005
- Maloney, David J.; Hecht, Sidney M.
- Organic Letters, Vol. 7, Issue 19
The Effect of the Carbonyl and Related Groups on the Reactivity of Halides in SN2 Reactions
journal, November 1964
- Bordwell, F. G.; Brannen, W. T.
- Journal of the American Chemical Society, Vol. 86, Issue 21
PEI-derivatized fullerene drug delivery using folate as a homing device targeting to tumor
journal, January 2013
- Shi, Jinjin; Zhang, Hongling; Wang, Lei
- Biomaterials, Vol. 34, Issue 1
Defining the Subcellular Interface of Nanoparticles by Live-Cell Imaging
journal, April 2013
- Hemmerich, Peter H.; von Mikecz, Anna H.
- PLoS ONE, Vol. 8, Issue 4
Elucidating the Mechanism of Cellular Uptake and Removal of Protein-Coated Gold Nanoparticles of Different Sizes and Shapes
journal, June 2007
- Chithrani, B. Devika; Chan, Warren C. W.
- Nano Letters, Vol. 7, Issue 6
Mechanisms of Quantum Dot Nanoparticle Cellular Uptake
journal, May 2009
- Zhang, Leshuai W.; Monteiro-Riviere, Nancy A.
- Toxicological Sciences, Vol. 110, Issue 1
C60 in Model Biological Systems. A Visible-UV Absorption Study of Solvent-Dependent Parameters and Solute Aggregation
journal, March 1994
- Bensasson, Rene V.; Bienvenue, Elisabeth; Dellinger, Marc
- The Journal of Physical Chemistry, Vol. 98, Issue 13
Size effect on UV-Vis absorption properties of colloidal C60 particles in water
journal, January 2009
- Kato, Haruhisa; Nakamura, Ayako; Takahashi, Kayori
- Physical Chemistry Chemical Physics, Vol. 11, Issue 25
Gold nanoparticles with different amino acid surfaces: Serum albumin adsorption, intracellular uptake and cytotoxicity
journal, November 2014
- Cai, Huanxin; Yao, Ping
- Colloids and Surfaces B: Biointerfaces, Vol. 123
Enhanced surface attachment of protein-type targeting ligands to poly(lactide- co -glycolide) nanoparticles using variable expression of polymeric acid functionality
journal, December 2008
- McCarron, Paul A.; Marouf, Waleed M.; Donnelly, Ryan F.
- Journal of Biomedical Materials Research Part A, Vol. 87A, Issue 4
Preparation of carbon nanotube bioconjugates for biomedical applications
journal, September 2009
- Liu, Zhuang; Tabakman, Scott M.; Chen, Zhuo
- Nature Protocols, Vol. 4, Issue 9
Efficient Methylation of Carboxylic Acids with Potassium Hydroxide/Methyl Sulfoxide and Iodomethane
journal, January 2001
- Avila-Zárraga, J. Gustavo; Martínez, Roberto
- Synthetic Communications, Vol. 31, Issue 14
Fullerene Derivatives: An Attractive Tool for Biological Applications
journal, March 2004
- Bosi, Susanna; Da Ros, Tatiana; Spalluto, Giampiero
- ChemInform, Vol. 35, Issue 10
Rapid Methylation on Carbon Frameworks Useful for the Synthesis of11CH3-Incorporated PET Tracers: Pd(0)-Mediated Rapid Coupling of Methyl Iodide with an Alkenyltributylstannane Leading to a 1-Methylalkene.
journal, June 2006
- Hosoya, Takamitsu; Sumi, Kengo; Doi, Hisashi
- ChemInform, Vol. 37, Issue 24
Enhanced surface attachment of protein-type targeting ligands to poly(lactide- co -glycolide) nanoparticles using variable expression of polymeric acid functionality
journal, December 2008
- McCarron, Paul A.; Marouf, Waleed M.; Donnelly, Ryan F.
- Journal of Biomedical Materials Research Part A, Vol. 87A, Issue 4
A Method for the High Efficiency of Water-Soluble Carbodiimide-Mediated Amidation
journal, April 1994
- Sehgal, D.; Vijay, I. K.
- Analytical Biochemistry, Vol. 218, Issue 1
Organic matter–microorganism–plant in soil bioremediation: a synergic approach
journal, April 2013
- Masciandaro, G.; Macci, C.; Peruzzi, E.
- Reviews in Environmental Science and Bio/Technology, Vol. 12, Issue 4
PEI-derivatized fullerene drug delivery using folate as a homing device targeting to tumor
journal, January 2013
- Shi, Jinjin; Zhang, Hongling; Wang, Lei
- Biomaterials, Vol. 34, Issue 1
Gold nanoparticles with different amino acid surfaces: Serum albumin adsorption, intracellular uptake and cytotoxicity
journal, November 2014
- Cai, Huanxin; Yao, Ping
- Colloids and Surfaces B: Biointerfaces, Vol. 123
InChI-based optimal descriptors: QSAR analysis of fullerene[C60]-based HIV-1 PR inhibitors by correlation balance
journal, April 2010
- Toropov, Andrey A.; Toropova, Alla P.; Benfenati, Emilio
- European Journal of Medicinal Chemistry, Vol. 45, Issue 4
Plant growth promotion in cereal and leguminous agricultural important plants: From microorganism capacities to crop production
journal, May 2014
- Pérez-Montaño, F.; Alías-Villegas, C.; Bellogín, R. A.
- Microbiological Research, Vol. 169, Issue 5-6
The effect of dissolved oxygen on N 2 O production by ammonia-oxidizing bacteria in an enriched nitrifying sludge
journal, December 2014
- Peng, Lai; Ni, Bing-Jie; Erler, Dirk
- Water Research, Vol. 66
A Strategy for the Generation of Surfaces Presenting Ligands for Studies of Binding Based on an Active Ester as a Common Reactive Intermediate: A Surface Plasmon Resonance Study
journal, February 1999
- Lahiri, Joydeep; Isaacs, Lyle; Tien, Joe
- Analytical Chemistry, Vol. 71, Issue 4
A Stereocontrolled Synthesis of δ- trans -Tocotrienoloic Acid
journal, September 2005
- Maloney, David J.; Hecht, Sidney M.
- Organic Letters, Vol. 7, Issue 19
Synthesis of carbon 'onions' in water
journal, November 2001
- Sano, N.; Wang, H.; Chhowalla, M.
- Nature, Vol. 414, Issue 6863
Preparation of carbon nanotube bioconjugates for biomedical applications
journal, September 2009
- Liu, Zhuang; Tabakman, Scott M.; Chen, Zhuo
- Nature Protocols, Vol. 4, Issue 9
A molecular method for the delivery of small molecules and proteins across the cell wall of algae using molecular transporters
journal, July 2012
- Hyman, J. M.; Geihe, E. I.; Trantow, B. M.
- Proceedings of the National Academy of Sciences, Vol. 109, Issue 33
NMR imaging shows water distribution and transport in plant root systems in situ
journal, January 1986
- Bottomley, P. A.; Rogers, H. H.; Foster, T. H.
- Proceedings of the National Academy of Sciences, Vol. 83, Issue 1
Root-Microbe Communication through Protein Secretion
journal, July 2008
- De-la-Peña, Clelia; Lei, Zhentian; Watson, Bonnie S.
- Journal of Biological Chemistry, Vol. 283, Issue 37
Preparation and biodistribution of radiolabeled fullerene C 60 nanocrystals
journal, August 2009
- Nikolić, Nadežda; Vranješ-Ðurić, Sanja; Janković, Drina
- Nanotechnology, Vol. 20, Issue 38
Mechanisms of Quantum Dot Nanoparticle Cellular Uptake
journal, May 2009
- Zhang, Leshuai W.; Monteiro-Riviere, Nancy A.
- Toxicological Sciences, Vol. 110, Issue 1
Interactions and Self-Organization in the Soil-Microbe Complex
journal, June 2004
- Young, I. M.
- Science, Vol. 304, Issue 5677
Identifying variation in resistance to the take-all fungus, Gaeumannomyces graminis var. tritici, between different ancestral and modern wheat species
journal, August 2014
- McMillan, Vanessa E.; Gutteridge, Richard J.; Hammond-Kosack, Kim E.
- BMC Plant Biology, Vol. 14, Issue 1
Defining the Subcellular Interface of Nanoparticles by Live-Cell Imaging
journal, April 2013
- Hemmerich, Peter H.; von Mikecz, Anna H.
- PLoS ONE, Vol. 8, Issue 4
Proteomic Analysis of Carbon Concentrating Chemolithotrophic Bacteria Serratia sp. for Sequestration of Carbon Dioxide
journal, March 2014
- Bharti, Randhir K.; Srivastava, Shaili; Thakur, Indu Shekhar
- PLoS ONE, Vol. 9, Issue 3
Fullerene Derivative as Anti-HIV Protease Inhibitor: Molecular Modeling and QSAR Approaches
journal, May 2012
- Ibrahim, M.; A. Saleh, N.; M. Elshemey, W.
- Mini-Reviews in Medicinal Chemistry, Vol. 12, Issue 6
The applications of buckminsterfullerene C 60 and derivatives in orthopaedic research
journal, January 2014
- Liu, Qihai; Cui, Quanjun; Li, Xudong Joshua
- Connective Tissue Research, Vol. 55, Issue 2
Collateral effects of antibiotics on mammalian gut microbiomes
journal, September 2012
- Looft, Torey; Allen, Heather K.
- Gut Microbes, Vol. 3, Issue 5
Works referencing / citing this record:
Buckyballs conjugated with nucleic acid sequences identifies microorganisms in live cell assays
journal, November 2017
- Cheng, Qingsu; Parvin, Bahram
- Journal of Nanobiotechnology, Vol. 15, Issue 1
Buckyballs conjugated with nucleic acid sequences identifies microorganisms in live cell assays
journal, November 2017
- Cheng, Qingsu; Parvin, Bahram
- Journal of Nanobiotechnology, Vol. 15, Issue 1