International code of nomenclature of prokaryotes
Abstract
Here, this volume contains the edition of the International Code of Nomenclature of Prokaryotes that was presented in draft form and available for comment at the Plenary Session of the Fourteenth International Congress of Bacteriology and Applied Microbiology (BAM), Montréal, 2014, together with updated lists of conserved and rejected bacterial names and of Opinions issued by the Judicial Commission. As in the past it brings together those changes accepted, published and documented by the ICSP and the Judicial Commission since the last revision was published. Several new appendices have been added to this edition. Appendix 11 addresses the appropriate application of the Candidatus concept, Appendix 12 contains the history of the van Niel Prize, and Appendix 13 contains the summaries of Congresses.
- Authors:
-
- Michigan State Univ., East Lansing, MI (United States)
- NamesforLife, LLC, East Lansing, MI (United States)
- Deutsche Sammlung von Mikroorganismen und Zellkulturen (DSMZ), Braunschweig (Germany)
- Publication Date:
- Research Org.:
- NamesforLife, LLC, East Lansing, MI (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER)
- OSTI Identifier:
- 1254416
- Grant/Contract Number:
- SC0006191
- Resource Type:
- Accepted Manuscript
- Journal Name:
- International Journal of Systematic and Evolutionary Microbiology
- Additional Journal Information:
- Journal Volume: 90; Journal Issue: 6; Journal ID: ISSN 1466-5026
- Publisher:
- International Union of Microbiological Societies
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; 60 APPLIED LIFE SCIENCES; biological nomenclature; rules; standards; terminology
Citation Formats
Garrity, George M., Parker, Charles T., and Tindall, Brian J. International code of nomenclature of prokaryotes. United States: N. p., 2015.
Web. doi:10.1099/ijsem.0.000778.
Garrity, George M., Parker, Charles T., & Tindall, Brian J. International code of nomenclature of prokaryotes. United States. https://doi.org/10.1099/ijsem.0.000778
Garrity, George M., Parker, Charles T., and Tindall, Brian J. Fri .
"International code of nomenclature of prokaryotes". United States. https://doi.org/10.1099/ijsem.0.000778. https://www.osti.gov/servlets/purl/1254416.
@article{osti_1254416,
title = {International code of nomenclature of prokaryotes},
author = {Garrity, George M. and Parker, Charles T. and Tindall, Brian J.},
abstractNote = {Here, this volume contains the edition of the International Code of Nomenclature of Prokaryotes that was presented in draft form and available for comment at the Plenary Session of the Fourteenth International Congress of Bacteriology and Applied Microbiology (BAM), Montréal, 2014, together with updated lists of conserved and rejected bacterial names and of Opinions issued by the Judicial Commission. As in the past it brings together those changes accepted, published and documented by the ICSP and the Judicial Commission since the last revision was published. Several new appendices have been added to this edition. Appendix 11 addresses the appropriate application of the Candidatus concept, Appendix 12 contains the history of the van Niel Prize, and Appendix 13 contains the summaries of Congresses.},
doi = {10.1099/ijsem.0.000778},
journal = {International Journal of Systematic and Evolutionary Microbiology},
number = 6,
volume = 90,
place = {United States},
year = {Fri Nov 20 00:00:00 EST 2015},
month = {Fri Nov 20 00:00:00 EST 2015}
}
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Works referenced in this record:
Approved Lists of Bacterial Names
journal, January 1980
- Sneath, P. H. A.; McGOWAN, Vicki; Skerman, V. B. D.
- International Journal of Systematic and Evolutionary Microbiology, Vol. 30, Issue 1
Judicial Commission of the International Committee on Systematics of Prokaryotes; XIth International (IUMS) Congress of Bacteriology and Applied Microbiology: Minutes of the meetings, 23, 24 and 27 July 2005, San Francisco, CA, USA
journal, July 2008
- Tindall, B. J.; De Vos, P.; Truper, H. G.
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 58, Issue 7
Taxonomic Note: Necessary Correction of Specific Epithets Formed as Substantives (Nouns) “in Apposition”
journal, July 1997
- Trůper, Hans G.; De'clari, Lanfranco
- International Journal of Systematic and Evolutionary Microbiology, Vol. 47, Issue 3
DNA relatedness among the pathovars of Pseudomonas syringae and description of Pseudomonas tremae sp. nov. and Pseudomonas cannabina sp. nov. (ex Sutic and Dowson 1959)
journal, April 1999
- Gardan, L.; Shafik, H.; Belouin, S.
- International Journal of Systematic Bacteriology, Vol. 49, Issue 2
Validation of the Publication of New Names and New Combinations Previously Effectively Published Outside the IJSB: List No. 51
journal, October 1994
- ,
- International Journal of Systematic Bacteriology, Vol. 44, Issue 4, p. 852-852
Designation of the Neotype Strain for Campylobacter sputorum (Prevot) Veron and Chatelain 1973
journal, April 1986
- Roop, R. M.; Smibert, R. M.; Johnson, J. L.
- International Journal of Systematic Bacteriology, Vol. 36, Issue 2
Opinion 38: Conservation of the Generic Name Lactobacillus Beijerinck
journal, January 1971
- ,
- International Journal of Systematic Bacteriology, Vol. 21, Issue 1, p. 104-104
Opinion 39: Rejection of the Generic Name Gaffkya Trevisan
journal, January 1971
- (for the Judicial Commission of the International Committee on Systematic Bacteriology), Editorial Secretary
- International Journal of Systematic Bacteriology, Vol. 21, Issue 1, p. 104-105
Reclassification of some species of Thiobacillus to the newly designated genera Acidithiobacillus gen. nov., Halothiobacillus gen. nov. and Thermithiobacillus gen. nov
journal, March 2000
- Kelly, D. P.; Wood, A. P.
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 50, Issue 2
The Tannin-Degrading Species Streptococcus gallolyticus and Streptococcus caprinus Are Subjective Synonyms
journal, July 1997
- Sly, L. I.; Cahill, M. M.; Osawa, R.
- International Journal of Systematic Bacteriology, Vol. 47, Issue 3
A new species - Microcyclus flavus
journal, January 1970
- Raj, H. D.
- International Journal of Systematic Bacteriology, Vol. 20, Issue 1
Actinomyces meyeri sp. nov., Specific Epithet rev.
journal, October 1984
- Cato, E. P.; Moore, W. E. C.; Nygaard, G.
- International Journal of Systematic Bacteriology, Vol. 34, Issue 4
Reclassification of Alcaligenes latus strains IAM 12599T and IAM 12664 and Pseudomonas saccharophila as Azohydromonas lata gen. nov., comb. nov., Azohydromonas australica sp. nov. and Pelomonas saccharophila gen. nov., comb. nov., respectively
journal, November 2005
- Xie, C. -H.
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 55, Issue 6
Opinion 49: Conservation of the Generic Name Rhodopseudomonas Czurda and Maresch emend. van Niel
posted_content, October 1974
- ,
- International Journal of Systematic and Evolutionary Microbiology, Vol. 24, Issue 4
Opinion 48: Rejection of the Name Aerobacter liquefaciens Beijerinck and Conservation of the Name Aeromonas Stanier with Aeromonas hydrophila as the Type Species
journal, October 1973
- ,
- International Journal of Systematic Bacteriology, Vol. 23, Issue 4, p. 473-474
Notes on Organisms Serologically Related to S. Enteritidis Gärtner. I.: The Dublin and Tokyo Types of Salmonella
journal, February 1930
- Bruce White, P.
- Epidemiology and Infection, Vol. 29, Issue 4
Cutting a Gordian Knot: Emended Classification and Description of the Genus Flavobacterium, Emended Description of the Family Flavobacteriaceae, and Proposal of Flavobacterium hydatis nom. nov. (Basonym, Cytophaga aquatilis Strohl and Tait 1978)
journal, January 1996
- Bernardet, J. -F.; Segers, P.; Vancanneyt, M.
- International Journal of Systematic Bacteriology, Vol. 46, Issue 1
Peptococcaceae, a New Family To Include the Gram-Positive, Anaerobic Cocci of the Genera Peptococcus, Peptostreptococcus, and Ruminococcus
journal, July 1971
- Rogosa, M.
- International Journal of Systematic Bacteriology, Vol. 21, Issue 3
Proposal to Divide the Genus Moraxella Lwoff 1939 emend. Henriksen and Bovre 1968 into Two Subgenera, Subgenus Moraxella (Lwoff 1939) Bovre 1979 and Subgenus Branhamella (Catlin 1970) Bovre 1979
journal, October 1979
- Bovre, K.
- International Journal of Systematic Bacteriology, Vol. 29, Issue 4
An Account of a Glanders-like Disease occurring in Rangoon
journal, April 1913
- Whitmore, A.
- Journal of Hygiene, Vol. 13, Issue 1
Bacterium melaninogenicum--A Misnomer
journal, June 1947
- Schwabacher, H.; Lucas, D. R.; Rimington, C.
- Journal of General Microbiology, Vol. 1, Issue 2
Status of the Name Proteus morganii and Designation of the Neotype Strain
journal, January 1971
- Lessel, E. F.
- International Journal of Systematic Bacteriology, Vol. 21, Issue 1
Opinion 46: Rejection of the Generic Name Aerobacter Beijerinck
journal, January 1971
- ,
- International Journal of Systematic Bacteriology, Vol. 21, Issue 1, p. 110-110
Opinion 45: Rejection of the Name Leuconostoc citrovorum (Hammer) Hucker and Pederson
journal, January 1971
- ,
- International Journal of Systematic Bacteriology, Vol. 21, Issue 1, p. 109-110
Opinion 60: Rejection of the Name Yersinia pseudotuberculosis subsp. pestis (van Loghem) Bercovier et al. 1981 and Conservation of the Name Yersinia pestis (Lehmann and Neumann) van Loghem 1944 for the Plague Bacillus: Judicial Commission of the International Committee on Systematic Bacteriology
journal, October 1985
- ,
- International Journal of Systematic Bacteriology, Vol. 35, Issue 4, p. 540-540
Correction of Orthography of Epithets in Pasteurella and Some Problems with Recommendations on Latinization
journal, October 1992
- Sneath, P. H. A.
- International Journal of Systematic Bacteriology, Vol. 42, Issue 4
Opinion No. 3.: The Gender of Generic Names Ending in -Bacter.
journal, April 1951
- ,
- International Bulletin of Bacteriological Nomenclature and Taxonomy, Vol. 1, Issue 2, p. 36-37
Works referencing / citing this record:
A proposal for a portal to make earth’s microbial diversity easily accessible and searchable
journal, March 2017
- Vinatzer, Boris A.; Tian, Long; Heath, Lenwood S.
- Antonie van Leeuwenhoek, Vol. 110, Issue 10
Streptomyces asenjonii sp. nov., isolated from hyper-arid Atacama Desert soils and emended description of Streptomyces viridosporus Pridham et al. 1958
journal, June 2017
- Goodfellow, Michael; Busarakam, Kanungnid; Idris, Hamidah
- Antonie van Leeuwenhoek, Vol. 110, Issue 9
Testing culture purity in prokaryotes: criteria and challenges
journal, February 2018
- Pinevich, Alexander V.; Andronov, Eugeny E.; Pershina, Elizaveta V.
- Antonie van Leeuwenhoek, Vol. 111, Issue 9
In defence of taxonomic governance
journal, February 2019
- Conix, Stijn
- Organisms Diversity & Evolution, Vol. 19, Issue 2
Uncultivated microbes in need of their own taxonomy
journal, July 2017
- Konstantinidis, Konstantinos T.; Rosselló-Móra, Ramon; Amann, Rudolf
- The ISME Journal, Vol. 11, Issue 11
1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life
journal, June 2017
- Mukherjee, Supratim; Seshadri, Rekha; Varghese, Neha J.
- Nature Biotechnology, Vol. 35, Issue 7
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
journal, August 2018
- Parks, Donovan H.; Chuvochina, Maria; Waite, David W.
- Nature Biotechnology, Vol. 36, Issue 10
Virus taxonomy in the age of metagenomics
journal, January 2017
- Simmonds, Peter; Adams, Mike J.; Benkő, Mária
- Nature Reviews Microbiology, Vol. 15, Issue 3
TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy
journal, May 2019
- Meier-Kolthoff, Jan P.; Göker, Markus
- Nature Communications, Vol. 10, Issue 1
Genomes OnLine Database (GOLD) v.6: data updates and feature enhancements
journal, October 2016
- Mukherjee, Supratim; Stamatis, Dimitri; Bertsch, Jon
- Nucleic Acids Research, Vol. 45, Issue D1
Modest proposals to expand the type material for naming of prokaryotes
journal, May 2016
- Whitman, William B.
- International Journal of Systematic and Evolutionary Microbiology, Vol. 66, Issue 5
Brevibacterium massiliense (Roux and Raoult 2009) is a later heterotypic synonym of Brevibacterium ravenspurgense (Mages, Frodl, Bernard and Funke 2009), using whole-genome sequence analysis as a comparative tool
journal, November 2016
- Bernard, Kathryn A.; Pacheco, Ana Luisa; Burdz, Tamara
- International Journal of Systematic and Evolutionary Microbiology, Vol. 66, Issue 11
Phylogenomic analysis of the family Peptostreptococcaceae (Clostridium cluster XI) and proposal for reclassification of Clostridium litorale (Fendrich et al. 1991) and Eubacterium acidaminophilum (Zindel et al. 1989) as Peptoclostridium litorale gen. nov. comb. nov. and Peptoclostridium acidaminophilum comb. nov.
journal, December 2016
- Galperin, Michael Y.; Brover, Vyacheslav; Tolstoy, Igor
- International Journal of Systematic and Evolutionary Microbiology, Vol. 66, Issue 12
Enterobacter aerogenes Hormaeche and Edwards 1960 (Approved Lists 1980) and Klebsiella mobilis Bascomb et al. 1971 (Approved Lists 1980) share the same nomenclatural type (ATCC 13048) on the Approved Lists and are homotypic synonyms, with consequences for the name Klebsiella mobilis Bascomb et al. 1971 (Approved Lists 1980)
journal, February 2017
- Tindall, B. J.; Sutton, G.; Garrity, G. M.
- International Journal of Systematic and Evolutionary Microbiology, Vol. 67, Issue 2
International Committee on Systematics of Prokaryotes Subcommittee for the Taxonomy of Rhizobium and Agrobacterium Minutes of the meeting, Budapest, 25 August 2016
journal, July 2017
- de Lajudie, Philippe M.; Young, J. Peter W.
- International Journal of Systematic and Evolutionary Microbiology, Vol. 67, Issue 7
Phylogenomic analysis of the species of the Mycobacterium tuberculosis complex demonstrates that Mycobacterium africanum, Mycobacterium bovis, Mycobacterium caprae, Mycobacterium microti and Mycobacterium pinnipedii are later heterotypic synonyms of Mycobacterium tuberculosis
journal, January 2018
- Riojas, Marco A.; McGough, Katya J.; Rider-Riojas, Cristin J.
- International Journal of Systematic and Evolutionary Microbiology, Vol. 68, Issue 1
Using average nucleotide identity to improve taxonomic assignments in prokaryotic genomes at the NCBI
journal, July 2018
- Ciufo, Stacy; Kannan, Sivakumar; Sharma, Shobha
- International Journal of Systematic and Evolutionary Microbiology, Vol. 68, Issue 7
Whole-genome-based revisit of Photorhabdus phylogeny: proposal for the elevation of most Photorhabdus subspecies to the species level and description of one novel species Photorhabdus bodei sp. nov., and one novel subspecies Photorhabdus laumondii subsp. clarkei subsp. nov.
journal, August 2018
- Machado, Ricardo A. R.; Wüthrich, Daniel; Kuhnert, Peter
- International Journal of Systematic and Evolutionary Microbiology, Vol. 68, Issue 8
Review of the genus Methylobacterium and closely related organisms: a proposal that some Methylobacterium species be reclassified into a new genus, Methylorubrum gen. nov.
journal, September 2018
- Green, Peter N.; Ardley, Julie K.
- International Journal of Systematic and Evolutionary Microbiology, Vol. 68, Issue 9
Minimal standards for the description of new genera and species of rhizobia and agrobacteria
journal, July 2019
- de Lajudie, Philippe M.; Andrews, Mitchell; Ardley, Julie
- International Journal of Systematic and Evolutionary Microbiology, Vol. 69, Issue 7
A phylogenomic and comparative genomic framework for resolving the polyphyly of the genus Bacillus: Proposal for six new genera of Bacillus species, Peribacillus gen. nov., Cytobacillus gen. nov., Mesobacillus gen. nov., Neobacillus gen. nov., Metabacillus gen. nov. and Alkalihalobacillus gen. nov.
journal, January 2020
- Patel, Sudip; Gupta, Radhey S.
- International Journal of Systematic and Evolutionary Microbiology, Vol. 70, Issue 1
Registration of names of prokaryotic Candidatus taxa in the IJSEM
journal, July 2020
- Oren, Aharon; Garrity, George M.; Trujillo, Martha E.
- International Journal of Systematic and Evolutionary Microbiology, Vol. 70, Issue 7
Necessity and rationale for the proposed name changes in the classification of Mollicutes species. Reply to: ‘Recommended rejection of the names Malacoplasma gen. nov., Mesomycoplasma gen. nov., Metamycoplasma gen. nov., Metamycoplasmataceae fam. nov., Mycoplasmoidaceae fam. nov., Mycoplasmoidales ord. nov., Mycoplasmoides gen. nov., Mycoplasmopsis gen. nov. [Gupta, Sawnani, Adeolu, Alnajar and Oren 2018] and all proposed species comb. nov. placed therein’, by M. Balish et al. (Int J Syst Evol Microbiol, 2019;69:3650–3653)
journal, February 2020
- Gupta, Radhey S.; Oren, Aharon
- International Journal of Systematic and Evolutionary Microbiology, Vol. 70, Issue 2
Opinions 97, 98 and 99
journal, February 2020
- Arahal, David R.
- International Journal of Systematic and Evolutionary Microbiology, Vol. 70, Issue 2
Genome-based analyses reveal a synonymy among Halorubrum distributum Zvyagintseva and Tarasov 1989; Oren and Ventosa 1996, Halorubrum terrestre Ventosa et al. 2004, Halorubrum arcis Xu et al. 2007 and Halorubrum litoreum Cui et al. 2007. Emended description of Halorubrum distributum Zvyagintseva and Tarasov 1989; Oren and Ventosa 1996
journal, March 2020
- Infante-Domínguez, Carmen; de la Haba, Rafael R.; Corral, Paulina
- International Journal of Systematic and Evolutionary Microbiology, Vol. 70, Issue 3
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journal, March 2020
- Diop, Awa; El Karkouri, Khalid; Raoult, Didier
- International Journal of Systematic and Evolutionary Microbiology, Vol. 70, Issue 3
Serratia vespertilionis (García-Fraile et al. 2015) is a later heterotypic synonym of Serratia ficaria (Grimont et al. 1981)
journal, March 2020
- García-Fraile, Paula; Spröer, Cathrin; Chesneau, Olivier
- International Journal of Systematic and Evolutionary Microbiology, Vol. 70, Issue 3
Treponema phagedenis (ex Noguchi 1912) Brumpt 1922 sp. nov., nom. rev., isolated from bovine digital dermatitis
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- Kuhnert, Peter; Brodard, Isabelle; Alsaaod, Maher
- International Journal of Systematic and Evolutionary Microbiology, Vol. 70, Issue 3
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journal, August 2019
- Konstantinidis, Konstantinos T.; Rosselló‐Móra, Ramon; Amann, Rudolf
- Environmental Microbiology, Vol. 22, Issue 3
Comparative Genomics of the Genus Lactobacillus Reveals Robust Phylogroups That Provide the Basis for Reclassification
journal, June 2018
- Salvetti, Elisa; Harris, Hugh M. B.; Felis, Giovanna E.
- Applied and Environmental Microbiology, Vol. 84, Issue 17
A New Genomics-Driven Taxonomy of Bacteria and Archaea: Are We There Yet?
journal, May 2016
- Garrity, George M.
- Journal of Clinical Microbiology, Vol. 54, Issue 8
An Update on the Novel Genera and Species and Revised Taxonomic Status of Bacterial Organisms Described in 2016 and 2017
journal, September 2018
- Munson, Erik; Carroll, Karen C.
- Journal of Clinical Microbiology, Vol. 57, Issue 2
Beware of False “Type Strain” Genome Sequences
journal, May 2019
- Salvà-Serra, Francisco; Jaén-Luchoro, Daniel; Karlsson, Roger
- Microbiology Resource Announcements, Vol. 8, Issue 22
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journal, December 2018
- Chung, Matthew; Munro, James B.; Tettelin, Hervé
- mSystems, Vol. 3, Issue 6
Same meat, different gravy: ignore the new names of mycobacteria
journal, July 2019
- Tortoli, Enrico; Brown-Elliott, Barbara A.; Chalmers, James D.
- European Respiratory Journal, Vol. 54, Issue 1
Towards long-read metagenomics: complete assembly of three novel genomes from bacteria dependent on a diazotrophic cyanobacterium in a freshwater lake co-culture
journal, January 2017
- Driscoll, Connor B.; Otten, Timothy G.; Brown, Nathan M.
- Standards in Genomic Sciences, Vol. 12, Issue 1
Genome-Based Taxonomic Classification of the Phylum Actinobacteria
journal, August 2018
- Nouioui, Imen; Carro, Lorena; García-López, Marina
- Frontiers in Microbiology, Vol. 9
Comparative Genomic and Phylogenomic Analyses Clarify Relationships Within and Between Bacillus cereus and Bacillus thuringiensis: Proposal for the Recognition of Two Bacillus thuringiensis Genomovars
journal, August 2019
- Baek, Inwoo; Lee, Kihyun; Goodfellow, Michael
- Frontiers in Microbiology, Vol. 10
Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes
journal, September 2019
- García-López, Marina; Meier-Kolthoff, Jan P.; Tindall, Brian J.
- Frontiers in Microbiology, Vol. 10
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journal, January 2020
- Gupta, Radhey S.; Patel, Sudip
- Frontiers in Microbiology, Vol. 10
Cyanobacterial PHA Production—Review of Recent Advances and a Summary of Three Years’ Working Experience Running a Pilot Plant
journal, March 2017
- Troschl, Clemens; Meixner, Katharina; Drosg, Bernhard
- Bioengineering, Vol. 4, Issue 4
Current Status and Potential Applications of Underexplored Prokaryotes
journal, October 2019
- Goh, Kian Mau; Shahar, Saleha; Chan, Kok-Gan
- Microorganisms, Vol. 7, Issue 10
Challenges with using names to link digital biodiversity information
journal, May 2016
- Patterson, David; Mozzherin, Dmitry; Shorthouse, David
- Biodiversity Data Journal, Vol. 4
Revisiting the Evolution and Taxonomy of Clostridia, a Phylogenomic Update
journal, May 2019
- Cruz-Morales, Pablo; Orellana, Camila A.; Moutafis, George
- Genome Biology and Evolution, Vol. 11, Issue 7
Notification of changes in taxonomic opinion previously published outside the IJSEM
journal, July 2012
- ,
- International Journal of Systematic and Evolutionary Microbiology, Vol. 62, Issue Pt_7, p. 1448-1449
List of new names and new combinations previously effectively, but not validly, published
journal, March 2020
- Oren, Aharon; Garrity, George
- International Journal of Systematic and Evolutionary Microbiology, Vol. 70, Issue 3
A Genome-Based Species Taxonomy of the Lactobacillus Genus Complex
journal, September 2019
- Wittouck, Stijn; Wuyts, Sander; Meehan, Conor J.
- mSystems, Vol. 4, Issue 5
Whole-genome-based revisit of Photorhabdus phylogeny: proposal for the elevation of most Photorhabdus subspecies to the species level and description of one novel species Photorhabdus bodei sp. nov., and one novel subspecies Photorhabdus laumondii subsp. clarkei subsp. nov.
text, January 2018
- Machado, Ricardo A. R.; Wüthrich, Daniel; Kuhnert, Peter
- Society for General Microbiology SGM
Treponema phagedenis (ex Noguchi 1912) Brumpt 1922 sp. nov., nom. rev., isolated from bovine digital dermatitis.
text, January 2020
- Kuhnert, Peter; Brodard, Isabelle; Alsaaod, Maher
- Society for General Microbiology SGM
All genera of the world: an overview and estimates based on the March 2020 release of the Interim Register of Marine and Nonmarine Genera (IRMNG)
journal, March 2020
- Rees, Tony; Vandepitte, Leen; Vanhoorne, Bart
- Megataxa, Vol. 1, Issue 2
Improving nomenclatural consistency: a decade of experience in the World Register of Marine Species
journal, December 2017
- Horton, Tammy; Gofas, Serge; Kroh, Andreas
- European Journal of Taxonomy, Issue 389
Nomenclature Abstract for Bacillus pseudomallei Whitmore 1913.
dataset, January 2019
- Parker, Charles Thomas; Garrity, George M.
- NamesforLife
Nomenclature Abstract for Bacillus whitmori Bergey et al. 1930.
dataset, January 2019
- Parker, Charles Thomas; Garrity, George M.
- NamesforLife
Nomenclature Abstract for Methanobacillus omelianskii Bryant et al. 1967.
dataset, January 2019
- Parker, Charles Thomas; Garrity, George M.
- NamesforLife
Nomenclature Abstract for Archaebacteria None 2015.
dataset, January 2019
- Parker, Charles Thomas; Garrity, George M.
- NamesforLife
Nomenclature Abstract for Eubacteria None 2015.
dataset, January 2019
- Parker, Charles Thomas; Garrity, George M.
- NamesforLife
Nomenclature Abstract for Eberthella (Buchanan 1918) Bergey et al. 1923.
dataset, January 2019
- Parker, Charles Thomas; Garrity, George M.
- NamesforLife
Nomenclature Abstract for Bacterium (Eberthella) Buchanan 1918.
dataset, January 2019
- Parker, Charles Thomas; Garrity, George M.
- NamesforLife
Nomenclature Abstract for Cylindrogloea Perfiliev 1914.
dataset, January 2019
- Parker, Charles Thomas; Garrity, George M.
- NamesforLife
Nomenclature Abstract for Cylindrogloea bacterifera Perfiliev 1914.
dataset, January 2019
- Parker, Charles Thomas; Garrity, George M.
- NamesforLife
Nomenclature Abstract for Aerobacter Beijerinck 1900 emend. Hormaeche and Edwards 1958.
dataset, January 2019
- Parker, Charles Thomas; Garrity, George M.
- NamesforLife
Nomenclature Abstract for Malleomyces Hallier 1870.
dataset, January 2019
- Parker, Charles Thomas; Garrity, George M.
- NamesforLife
Nomenclature Abstract for Malleomyces equestris Hallier 1870.
dataset, January 2019
- Parker, Charles Thomas; Garrity, George M.
- NamesforLife
Nomenclature Abstract for Cyanophyceae Sachs 1874.
dataset, January 2019
- Parker, Charles Thomas; Garrity, George M.
- NamesforLife
Nomenclature Abstract for Schizophycetes Cohn 1875.
dataset, January 2019
- Parker, Charles Thomas; Garrity, George M.
- NamesforLife
Nomenclature Abstract for Thermobacterium Orla-Jensen 1919.
dataset, January 2019
- Parker, Charles Thomas; Garrity, George M,
- NamesforLife
Nomenclature Abstract for Pseudomonadoideae None 2015.
dataset, January 2019
- Parker, Charles Thomas; Garrity, George M.
- NamesforLife
Nomenclature Abstract for Pseudomonadeae None 2015.
dataset, January 2019
- Parker, Charles Thomas; Garrity, George M.
- NamesforLife
Nomenclature Abstract for Pseudomonadinae None 2015.
dataset, January 2019
- Parker, Charles Thomas; Garrity, George M.
- NamesforLife
Nomenclature Abstract for Muellerina de Petschenko 1910.
dataset, January 2019
- Parker, Charles Thomas; Garrity, George M.
- NamesforLife
Nomenclature Abstract for Corynebacterium pseudodiphtheriticum Lehmann and Neumann 1896 (Approved Lists 1980) emend. Nouioui et al. 2018.
dataset, January 2013
- Parker, Charles Thomas; Taylor, Dorothea; Garrity, George M.
- NamesforLife
TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy
journal, May 2019
- Meier-Kolthoff, Jan P.; Göker, Markus
- Nature Communications, Vol. 10, Issue 1
Phylogenomic analysis of the family Peptostreptococcaceae (Clostridium cluster XI) and proposal for reclassification of Clostridium litorale (Fendrich et al. 1991) and Eubacterium acidaminophilum (Zindel et al. 1989) as Peptoclostridium litorale gen. nov. comb. nov. and Peptoclostridium acidaminophilum comb. nov.
journal, December 2016
- Galperin, Michael Y.; Brover, Vyacheslav; Tolstoy, Igor
- International Journal of Systematic and Evolutionary Microbiology, Vol. 66, Issue 12
Using average nucleotide identity to improve taxonomic assignments in prokaryotic genomes at the NCBI
journal, July 2018
- Ciufo, Stacy; Kannan, Sivakumar; Sharma, Shobha
- International Journal of Systematic and Evolutionary Microbiology, Vol. 68, Issue 7
Complete Genome Sequence of the Freshwater Bacterium Beggiatoa leptomitoformis Strain D-401
journal, April 2018
- Fomenkov, Alexey; Sun, Zhiyi; Vincze, Tamas
- Genome Announcements, Vol. 6, Issue 17
Beware of False “Type Strain” Genome Sequences
journal, May 2019
- Salvà-Serra, Francisco; Jaén-Luchoro, Daniel; Karlsson, Roger
- Microbiology Resource Announcements, Vol. 8, Issue 22
Using Core Genome Alignments To Assign Bacterial Species
journal, December 2018
- Chung, Matthew; Munro, James B.; Tettelin, Hervé
- mSystems, Vol. 3, Issue 6
Both clinical and environmental Caulobacter species are virulent in the Galleria mellonella infection model
journal, March 2020
- Moore, Gabriel M.; Gitai, Zemer
- PLOS ONE, Vol. 15, Issue 3
A Metagenomic Approach to Cyanobacterial Genomics
journal, May 2017
- Alvarenga, Danillo O.; Fiore, Marli F.; Varani, Alessandro M.
- Frontiers in Microbiology, Vol. 8
Commentary: Genome-Based Taxonomic Classification of the Phylum Actinobacteria
journal, February 2019
- Gupta, Radhey S.
- Frontiers in Microbiology, Vol. 10
Comparative Genomic and Phylogenomic Analyses Clarify Relationships Within and Between Bacillus cereus and Bacillus thuringiensis: Proposal for the Recognition of Two Bacillus thuringiensis Genomovars
journal, August 2019
- Baek, Inwoo; Lee, Kihyun; Goodfellow, Michael
- Frontiers in Microbiology, Vol. 10
Cyanobacterial PHA Production—Review of Recent Advances and a Summary of Three Years’ Working Experience Running a Pilot Plant
journal, March 2017
- Troschl, Clemens; Meixner, Katharina; Drosg, Bernhard
- Bioengineering, Vol. 4, Issue 4
Challenges with using names to link digital biodiversity information
journal, May 2016
- Patterson, David; Mozzherin, Dmitry; Shorthouse, David
- Biodiversity Data Journal, Vol. 4
An online global database of Hemiptera -Phytoplasma-Plant biological interactions
journal, February 2019
- Trivellone, Valeria
- Biodiversity Data Journal, Vol. 7