Integrating ecological and engineering concepts of resilience in microbial communities
Abstract
We note that many definitions of resilience have been proffered for natural and engineered ecosystems, but a conceptual consensus on resilience in microbial communities is still lacking. Here, we argue that the disconnect largely results from the wide variance in microbial community complexity, which range from simple synthetic consortia to complex natural communities, and divergence between the typical practical outcomes emphasized by ecologists and engineers. Viewing microbial communities as elasto-plastic systems, we argue that this gap between the engineering and ecological definitions of resilience stems from their respective emphases on elastic and plastic deformation, respectively. We propose that the two concepts may be fundamentally united around the resilience of function rather than state in microbial communities and the regularity in the relationship between environmental variation and a community’s functional response. Furthermore, we posit that functional resilience is an intrinsic property of microbial communities, suggesting that state changes in response to environmental variation may be a key mechanism driving resilience in microbial communities.
- Authors:
-
- Pacific Northwest National Lab. (PNNL), Richland, WA (United States). Biological Sciences Division
- Pacific Northwest National Lab. (PNNL), Richland, WA (United States). Environmental Molecular Sciences Lab.
- Publication Date:
- Research Org.:
- Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)
- Sponsoring Org.:
- USDOE
- OSTI Identifier:
- 1240232
- Report Number(s):
- PNNL-SA-112189
Journal ID: ISSN 1664-302X; KP1601010
- Grant/Contract Number:
- AC05-76RL01830
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Frontiers in Microbiology
- Additional Journal Information:
- Journal Volume: 6; Journal ID: ISSN 1664-302X
- Publisher:
- Frontiers Research Foundation
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; microbial communities; microbial ecology; resilience; resistance; robustness; stability; networks
Citation Formats
Song, Hyun -Seob, Renslow, Ryan S., Fredrickson, Jim K., and Lindemann, Stephen R. Integrating ecological and engineering concepts of resilience in microbial communities. United States: N. p., 2015.
Web. doi:10.3389/fmicb.2015.01298.
Song, Hyun -Seob, Renslow, Ryan S., Fredrickson, Jim K., & Lindemann, Stephen R. Integrating ecological and engineering concepts of resilience in microbial communities. United States. https://doi.org/10.3389/fmicb.2015.01298
Song, Hyun -Seob, Renslow, Ryan S., Fredrickson, Jim K., and Lindemann, Stephen R. Tue .
"Integrating ecological and engineering concepts of resilience in microbial communities". United States. https://doi.org/10.3389/fmicb.2015.01298. https://www.osti.gov/servlets/purl/1240232.
@article{osti_1240232,
title = {Integrating ecological and engineering concepts of resilience in microbial communities},
author = {Song, Hyun -Seob and Renslow, Ryan S. and Fredrickson, Jim K. and Lindemann, Stephen R.},
abstractNote = {We note that many definitions of resilience have been proffered for natural and engineered ecosystems, but a conceptual consensus on resilience in microbial communities is still lacking. Here, we argue that the disconnect largely results from the wide variance in microbial community complexity, which range from simple synthetic consortia to complex natural communities, and divergence between the typical practical outcomes emphasized by ecologists and engineers. Viewing microbial communities as elasto-plastic systems, we argue that this gap between the engineering and ecological definitions of resilience stems from their respective emphases on elastic and plastic deformation, respectively. We propose that the two concepts may be fundamentally united around the resilience of function rather than state in microbial communities and the regularity in the relationship between environmental variation and a community’s functional response. Furthermore, we posit that functional resilience is an intrinsic property of microbial communities, suggesting that state changes in response to environmental variation may be a key mechanism driving resilience in microbial communities.},
doi = {10.3389/fmicb.2015.01298},
journal = {Frontiers in Microbiology},
number = ,
volume = 6,
place = {United States},
year = {Tue Dec 01 00:00:00 EST 2015},
month = {Tue Dec 01 00:00:00 EST 2015}
}
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Impact of fire on active layer and permafrost microbial communities and metagenomes in an upland Alaskan boreal forest
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journal, May 2011
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journal, October 2011
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Generic Indicators for Loss of Resilience Before a Tipping Point Leading to Population Collapse
journal, May 2012
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- Science, Vol. 336, Issue 6085
Microbiome Data Distinguish Patients with Clostridium difficile Infection and Non-C. difficile-Associated Diarrhea from Healthy Controls
journal, May 2014
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Resilience and Stability of Ecological Systems
journal, November 1973
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Networked buffering: a basic mechanism for distributed robustness in complex adaptive systems
journal, June 2010
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Dynamic changes in short- and long-term bacterial composition following fecal microbiota transplantation for recurrent Clostridium difficile infection
journal, March 2015
- Weingarden, Alexa; González, Antonio; Vázquez-Baeza, Yoshiki
- Microbiome, Vol. 3, Issue 1
Microbiota Dynamics in Patients Treated with Fecal Microbiota Transplantation for Recurrent Clostridium difficile Infection
journal, November 2013
- Song, Yang; Garg, Shashank; Girotra, Mohit
- PLoS ONE, Vol. 8, Issue 11
Prediction of Metabolic Flux Distribution from Gene Expression Data Based on the Flux Minimization Principle
journal, November 2014
- Song, Hyun-Seob; Reifman, Jaques; Wallqvist, Anders
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journal, February 2005
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The epsomitic phototrophic microbial mat of Hot Lake, Washington: community structural responses to seasonal cycling
journal, January 2013
- Lindemann, Stephen R.; Moran, James J.; Stegen, James C.
- Frontiers in Microbiology, Vol. 4
Individualized medicine and the microbiome in reproductive tract
journal, April 2015
- Braundmeier, Andrea G.; Lenz, Katherine M.; Inman, Kristin S.
- Frontiers in Physiology, Vol. 6
Integrated in silico Analyses of Regulatory and Metabolic Networks of Synechococcus sp. PCC 7002 Reveal Relationships between Gene Centrality and Essentiality
journal, March 2015
- Song, Hyun-Seob; McClure, Ryan; Bernstein, Hans
- Life, Vol. 5, Issue 2
Mathematical Modeling of Microbial Community Dynamics: A Methodological Review
journal, October 2014
- Song, Hyun-Seob; Cannon, William; Beliaev, Alexander
- Processes, Vol. 2, Issue 4
No Vacancy: How Beneficial Microbes Cooperate with Immunity To Provide Colonization Resistance to Pathogens
journal, April 2015
- Sassone-Corsi, Martina; Raffatellu, Manuela
- The Journal of Immunology, Vol. 194, Issue 9
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