New coordination features; A bridging pyridine and the forced shortest non-covalent distance between two CO32- species
Abstract
The aerobic reaction of the multidentate ligand 2,6-bis-(3-oxo-3-(2-hydroxyphenyl)-propionyl)-pyridine, H4L, with Co(II) salts in strong basic conditions produces the clusters [Co4(L)2(OH)(py)7]NO3 (1) and [Co8Na4(L)4(OH)2(CO3)2(py)10](BF4)2 (2). Analysis of their structure unveils unusual coordination features including a very rare bridging pyridine ligand or two trapped carbonate anions within one coordination cage, forced to stay at an extremely close distance (dO···O = 1.946 Å). This unprecedented non-bonding proximity represents a meeting point between long covalent interactions and “intermolecular” contacts. Furthermore, these original motifs have been analysed here through DFT calculations, which have yielded interaction energies and the reduced repulsion energy experimented by both CO32- anions when located in close proximity inside the coordination cage.
- Authors:
-
- Universitat de Barcelona, Barcelona (Spain)
- CSIC and Universidad de Zaragoza, Zaragoza (Spain)
- Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Basic Energy Sciences (BES)
- OSTI Identifier:
- 1214431
- Grant/Contract Number:
- AC02-05CH11231; Starting Grant (258060 FuncMolQIP)
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Chemical Science
- Additional Journal Information:
- Journal Volume: 6; Journal Issue: 1; Journal ID: ISSN 2041-6520
- Publisher:
- Royal Society of Chemistry
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CHEMISTRY
Citation Formats
Velasco, V., Aguilà, D., Barrios, L. A., Borilovic, I., Roubeau, O., Ribas-Ariño, J., Fumanal, M., Teat, S. J., and Aromi, G. New coordination features; A bridging pyridine and the forced shortest non-covalent distance between two CO32- species. United States: N. p., 2014.
Web. doi:10.1039/C4SC02491E.
Velasco, V., Aguilà, D., Barrios, L. A., Borilovic, I., Roubeau, O., Ribas-Ariño, J., Fumanal, M., Teat, S. J., & Aromi, G. New coordination features; A bridging pyridine and the forced shortest non-covalent distance between two CO32- species. United States. https://doi.org/10.1039/C4SC02491E
Velasco, V., Aguilà, D., Barrios, L. A., Borilovic, I., Roubeau, O., Ribas-Ariño, J., Fumanal, M., Teat, S. J., and Aromi, G. Mon .
"New coordination features; A bridging pyridine and the forced shortest non-covalent distance between two CO32- species". United States. https://doi.org/10.1039/C4SC02491E. https://www.osti.gov/servlets/purl/1214431.
@article{osti_1214431,
title = {New coordination features; A bridging pyridine and the forced shortest non-covalent distance between two CO32- species},
author = {Velasco, V. and Aguilà, D. and Barrios, L. A. and Borilovic, I. and Roubeau, O. and Ribas-Ariño, J. and Fumanal, M. and Teat, S. J. and Aromi, G.},
abstractNote = {The aerobic reaction of the multidentate ligand 2,6-bis-(3-oxo-3-(2-hydroxyphenyl)-propionyl)-pyridine, H4L, with Co(II) salts in strong basic conditions produces the clusters [Co4(L)2(OH)(py)7]NO3 (1) and [Co8Na4(L)4(OH)2(CO3)2(py)10](BF4)2 (2). Analysis of their structure unveils unusual coordination features including a very rare bridging pyridine ligand or two trapped carbonate anions within one coordination cage, forced to stay at an extremely close distance (dO···O = 1.946 Å). This unprecedented non-bonding proximity represents a meeting point between long covalent interactions and “intermolecular” contacts. Furthermore, these original motifs have been analysed here through DFT calculations, which have yielded interaction energies and the reduced repulsion energy experimented by both CO32- anions when located in close proximity inside the coordination cage.},
doi = {10.1039/C4SC02491E},
journal = {Chemical Science},
number = 1,
volume = 6,
place = {United States},
year = {Mon Sep 29 00:00:00 EDT 2014},
month = {Mon Sep 29 00:00:00 EDT 2014}
}
Web of Science
Figures / Tables:
Works referenced in this record:
Complexes of a novel multinucleating poly-β-diketonate ligand
journal, January 2004
- Aromí, Guillem; Boldron, Christophe; Gamez, Patrick
- Dalton Trans., Issue 21
Encapsulation of atmospheric CO2 by a self-assembled decanuclear cadmium complex via unfamiliar perchlorato and carbonato bridges
journal, January 2012
- García-Deibe, Ana M.; Portela-García, Cristina; Fondo, Matilde
- Chemical Communications, Vol. 48, Issue 79
Bis(β-diketonate) ligands for the synthesis of bimetallic complexes of TiIII, VIII, MnIII and FeIII with a triple-helix structure
journal, January 1997
- Grillo, Vincent A.; Seddon, Elisa J.; Grant, Craig M.
- Chemical Communications, Issue 16
SIR 97: a new tool for crystal structure determination and refinement
journal, February 1999
- Altomare, Angela; Burla, Maria Cristina; Camalli, Mercedes
- Journal of Applied Crystallography, Vol. 32, Issue 1
PHI: A powerful new program for the analysis of anisotropic monomeric and exchange-coupled polynuclear d - and f -block complexes
journal, February 2013
- Chilton, Nicholas F.; Anderson, Russell P.; Turner, Lincoln D.
- Journal of Computational Chemistry, Vol. 34, Issue 13
Orbital Angular Momentum in the Theory of Paramagnetic Clusters
journal, September 1971
- Lines, M. E.
- The Journal of Chemical Physics, Vol. 55, Issue 6
Synthesis of a novel heptacoordinated Fe(iii) dinuclear complex: experimental and theoretical study of the magnetic properties
journal, January 2010
- Craig, Gavin A.; Barrios, Leoní A.; Costa, José Sánchez
- Dalton Transactions, Vol. 39, Issue 20
Structural and Kinetic Study of Reversible CO 2 Fixation by Dicopper Macrocyclic Complexes. From Intramolecular Binding to Self-Assembly of Molecular Boxes
journal, October 2007
- Company, Anna; Jee, Joo-Eun; Ribas, Xavi
- Inorganic Chemistry, Vol. 46, Issue 22
A novel decanuclear Co(ii) cluster with adamantane-like metallic skeleton supported by 8-hydroxyquinoline and in situ formed CO32− anions
journal, January 2012
- Wang, Lei; Li, Yi; Peng, Yu
- Dalton Transactions, Vol. 41, Issue 20
Crevice co-ordination: binding of a ligand molecule in a molecular crevice. Crystal and molecular structures of µ-oxo-µ-pyridine-µ-sulphido-bis[(OO′-di-isopropyl phosphorodithioato)oxo-molybdenum( V )] and µ-oxo-µ-pyridazine-µ-sulphido-bis[(OO′-di-isopropyl phosphorodithioato)oxomolybdenum( V )]
journal, January 1983
- Drew, Michael G. B.; Baricelli, Pablo J.; Mitchell, Philip C. H.
- J. Chem. Soc., Dalton Trans., Issue 4
Self-Assembly of a Chiral Carbonate- and Cytidine-Containing Dodecanuclear Copper(II) Complex: a Multiarm-Supplied Globular Capsule
journal, November 2008
- Armentano, Donatella; Marino, Nadia; Mastropietro, Teresa F.
- Inorganic Chemistry, Vol. 47, Issue 22
Molecular Structures of the Heavier Alkali Metal Salts of Supermesitylphosphane: A Systematic Investigation
journal, August 1998
- Rabe, Gerd W.; Heise, Henrike; Yap, Glenn P. A.
- Inorganic Chemistry, Vol. 37, Issue 17
Carbonate-Templated Self-Assembly of an Alkylthiolate-Bridged Cadmium Macrocycle
journal, February 2013
- Lai, Wei; Berry, Steven M.; Kaplan, William P.
- Inorganic Chemistry, Vol. 52, Issue 5
A Series of Trinuclear Cu II Ln III Cu II Complexes Derived from 2,6-Di(acetoacetyl)pyridine: Synthesis, Structure, and Magnetism
journal, July 2004
- Shiga, Takuya; Ohba, Masaaki; Ōkawa, Hisashi
- Inorganic Chemistry, Vol. 43, Issue 14
Fully optimized contracted Gaussian basis sets for atoms Li to Kr
journal, August 1992
- Schäfer, Ansgar; Horn, Hans; Ahlrichs, Reinhart
- The Journal of Chemical Physics, Vol. 97, Issue 4
Poly beta-diketones: Prime ligands to generate supramolecular metalloclusters
journal, April 2008
- Aromí, Guillem; Gamez, Patrick; Reedijk, Jan
- Coordination Chemistry Reviews, Vol. 252, Issue 8-9
Supramolecular Coordination Chemistry: The Synergistic Effect of Serendipity and Rational Design
journal, November 2008
- Saalfrank, Rolf W.; Maid, Harald; Scheurer, Andreas
- Angewandte Chemie International Edition, Vol. 47, Issue 46
Detection and Structure of HOON: Microwave Spectroscopy Reveals an O-O Bond Exceeding 1.9 A
journal, December 2013
- Crabtree, K. N.; Talipov, M. R.; Martinez, O.
- Science, Vol. 342, Issue 6164
Carbonate formation within a nickel dimer: synthesis of a coordinatively unsaturated bis(μ-hydroxo) dinickel complex and its reactivity toward carbon dioxide
journal, January 2010
- Wikstrom, Jeffrey P.; Filatov, Alexander S.; Mikhalyova, Elena A.
- Dalton Transactions, Vol. 39, Issue 10
Fixation of atmospheric carbon dioxide by a series of hydroxo complexes of divalent metal ions and the implication for the catalytic role of metal ion in carbonic anhydrase. Synthesis, characterization, and molecular structure of [LM(OH)]n (n = 1 or 2) and LM(.mu.-CO3)ML (M(II) = Mn, Fe, Co, Ni, Cu, Zn; L = HB(3,5-iso-Pr2pz)3)
journal, June 1993
- Kitajima, Nobumasa; Hikichi, Shiro; Tanaka, Masako
- Journal of the American Chemical Society, Vol. 115, Issue 13
Template synthesis of {(Mo V 2 O 4 )(O 3 PCH 2 PO 3 )} n clusters (n = 3, 4, 10): solid state and solution studies
journal, January 2004
- Peloux, Charlotte du; Dolbecq, Anne; Mialane, Pierre
- Dalton Trans., Issue 8
Synthesis, structure and magnetism of a {Mn[NNO]}10 wheel
journal, January 2008
- Hoshiko, Jeffrey A.; Wang, Guangbin; Ziller, Joseph W.
- Dalton Transactions, Issue 42
Templated assembly of a µ6-CO32– dodecanuclear lanthanum dibenzoylmethanide hydroxido cluster with concomitant formation of phenylglyoxylate
journal, January 2007
- Andrews, Philip C.; Beck, Tobias; Forsyth, Craig M.
- Dalton Transactions, Issue 48
Spontaneous fixation of CO2 by {Ni9} constructed from tauric anion: Synthesis and X-ray structure of [Ni9(NH2CH2CH2SO3)6(CH3CO2)6(H2O)6(OH)6(μ6-CO3)2]4−
journal, November 2006
- Jiang, Yiming; Wang, Xiujian; Ying, Xiujü
- Inorganic Chemistry Communications, Vol. 9, Issue 11
Di-, tri- and oligometallic platforms: Versatile components for use in metallo-supramolecular chemistry
journal, September 2013
- Clegg, Jack K.; Li, Feng; Lindoy, Leonard F.
- Coordination Chemistry Reviews, Vol. 257, Issue 17-18
Kinetics and mechanistic analysis of an extremely rapid carbon dioxide fixation reaction
journal, January 2011
- Huang, D.; Makhlynets, O. V.; Tan, L. L.
- Proceedings of the National Academy of Sciences, Vol. 108, Issue 4
Self-Assembly of Thiacalix[4]arene-Supported Nickel(II)/Cobalt(II) Complexes Sustained by in Situ Generated 5-Methyltetrazolate Ligand
journal, May 2012
- Xiong, Kecai; Jiang, Feilong; Gai, Yanli
- Crystal Growth & Design, Vol. 12, Issue 6
Magnetic properties of six-coordinated high-spin cobalt(II) complexes: Theoretical background and its application
journal, September 2008
- Lloret, Francesc; Julve, Miguel; Cano, Joan
- Inorganica Chimica Acta, Vol. 361, Issue 12-13
Density‐functional thermochemistry. III. The role of exact exchange
journal, April 1993
- Becke, Axel D.
- The Journal of Chemical Physics, Vol. 98, Issue 7, p. 5648-5652
A short history of SHELX
journal, December 2007
- Sheldrick, George M.
- Acta Crystallographica Section A Foundations of Crystallography, Vol. 64, Issue 1, p. 112-122
Synthesis and properties of a novel linear [Ni4L2(py)6] cluster: Designed ligand-controlled topology of the metals
journal, October 2008
- Barrios, Leoní A.; Aguilà, David; Méllat, Stephane
- Comptes Rendus Chimie, Vol. 11, Issue 10
Double-CO32− Centered [CoII5] Wheel and Modeling of Its Magnetic Properties
journal, October 2010
- Sarkar, Mrinal; Aromí, Guillem; Cano, Joan
- Chemistry - A European Journal, Vol. 16, Issue 46
Synthesis and Characterization of Octa- and Hexanuclear Polyoxomolybdate Wheels: Role of the Inorganic Template and of the Counterion
journal, June 2006
- Dolbecq, Anne; Lisnard, Laurent; Mialane, Pierre
- Inorganic Chemistry, Vol. 45, Issue 15
Synthesis, Crystal Structure, and Near-IR Luminescent Properties of Lanthanide Bis(β-diketonate) Complexes
journal, April 2013
- Hou, Yanjun; Shi, Jing; Chu, Wenyi
- European Journal of Inorganic Chemistry, Vol. 2013, Issue 17
Crevice co-ordination. Binding of a ligand molecule in a molecular crevice. The crystal and molecular structure of µ-oxo-µ-pyridine-µ-sulphido-bis[(O,O-di-isopropyl phosphorodithioato)oxomolybdenum( V )]
journal, January 1982
- Drew, Michael G. B.; Mitchell, Philip C. H.; Read, Alan R.
- J. Chem. Soc., Chem. Commun., Issue 4
A Trinuclear Copper(II) Cryptate and Its μ3-CO3 Cascade Complex: Thermodynamics, Structural and Magnetic Properties
journal, August 2011
- Mateus, Pedro; Delgado, Rita; Lloret, Francesc
- Chemistry - A European Journal, Vol. 17, Issue 40
A novel bis-β-diketonate ligand stabilizes a [Co(II)8] cage that encapsulates a (μ3-O)⋯H⋯(μ3-O) moiety
journal, April 2013
- Salinas-Uber, Jorge; Barrios, Leoní A.; Roubeau, Olivier
- Polyhedron, Vol. 54
A new enneanuclear nickel( ii ) cluster with a rectangular face-centered trigonal prism structure and cluster glass behavior
journal, January 2012
- Xu, Jing-Yuan; Song, Hai-Bin; Xu, Gong-Feng
- Chem. Commun., Vol. 48, Issue 7
Dinuclear Nickel(II) Complexes of an Unsymmetric “End-Off” Compartmental Ligand: Conversion of Urea into Cyanate at a Dinuclear Nickel Core
journal, November 1998
- Uozumi, Syunsuke; Furutachi, Hideki; Ohba, Masaaki
- Inorganic Chemistry, Vol. 37, Issue 24
Two isosceles coordination [Ni3] triangles strongly interacting via hydrogen bonds
journal, March 2013
- Craig, Gavin A.; Roubeau, Olivier; Ribas-Ariño, Jordi
- Polyhedron, Vol. 52
Lanthaballs: Chiral, Structurally Layered Polycarbonate Tridecanuclear Lanthanoid Clusters
journal, May 2009
- Chesman, Anthony S. R.; Turner, David R.; Moubaraki, Boujemaa
- Chemistry - A European Journal, Vol. 15, Issue 21
Single-crystal structure validation with the program PLATON
journal, January 2003
- Spek, A. L.
- Journal of Applied Crystallography, Vol. 36, Issue 1, p. 7-13
Designed Topology and Site-Selective Metal Composition in Tetranuclear [MM′⋅⋅⋅M′M] Linear Complexes
journal, October 2009
- Barrios, Leoní A.; Aguilà, David; Roubeau, Olivier
- Chemistry - A European Journal, Vol. 15, Issue 42
Molecular assembly of two [Co( ii ) 4 ] linear arrays
journal, January 2011
- Aguilà, David; Barrios, Leoní A.; Roubeau, Olivier
- Chem. Commun., Vol. 47, Issue 2
Semiempirical GGA-type density functional constructed with a long-range dispersion correction
journal, January 2006
- Grimme, Stefan
- Journal of Computational Chemistry, Vol. 27, Issue 15, p. 1787-1799
Chlorine-Induced Assembly of a Cationic Coordination Cage with a μ5-Carbonato-Bridged MnII24 Core
journal, March 2012
- Xiong, Ke-Cai; Jiang, Fei-Long; Gai, Yan-Li
- Chemistry - A European Journal, Vol. 18, Issue 18
Powder and single-crystal X-ray diffraction study of the structure of [Y(H 2 O)] 2 (C 2 O 4 )(CO 3 ) 2
journal, December 2000
- Bataille, Thierry; Louër, Daniel; Bataille, Thierry
- Acta Crystallographica Section B Structural Science, Vol. 56, Issue 6
Synthesis, structure, and characterization of a series of Ag(i), Cu(ii) and Ni(ii) complexes based on 2,5-dimethyl-1,3,4-thiodiazole
journal, January 2013
- Liu, Ju Yan; Liu, Zhong Yi; Zhang, Li Jun
- CrystEngComm, Vol. 15, Issue 32
Ferromagnetic Cu II 4 , Co II 4 , and Ni II 6 Azido Complexes Derived from Metal-Assisted Methanolysis of Di-2,6-(2-pyridylcarbonyl)pyridine
journal, April 2009
- Georgopoulou, Anastasia N.; Raptopoulou, Catherine P.; Psycharis, Vassilis
- Inorganic Chemistry, Vol. 48, Issue 7
Spectroscopic and structural studies on 1 : 1 adducts of silver(I) salts with tricyclohexylphosphine
journal, January 1996
- Bowmaker, Graham A.; Harvey, Peta J.
- Journal of the Chemical Society, Dalton Transactions, Issue 12
The calculation of small molecular interactions by the differences of separate total energies. Some procedures with reduced errors
journal, October 1970
- Boys, S.F.; Bernardi, F.
- Molecular Physics, Vol. 19, Issue 4, p. 553-566
Design, Synthesis, and Structural Characterization of a New Class of Ferrocene-Containing Heterometallic Triple-Stranded Helicates
journal, December 2012
- Raja, Muthukrishna; Iyer, Ratnasabapathy G.; Gwengo, Chengeto
- Organometallics, Vol. 32, Issue 1
Novel [Tp*WS 3 Cu 2 ]-Based Coordination Compounds: Assembly, Crystal Structures, and Third-Order Nonlinear Optical Properties
journal, April 2013
- Xu, Cheng; Zhang, Zhi-Yuan; Ren, Zhi-Gang
- Crystal Growth & Design, Vol. 13, Issue 6
Di- and trinuclear Co II complexes of a bis-β-diketone ligand with variable conformation: structure and magnetic studies
journal, January 2006
- Aromí, Guillem; Stoeckli-Evans, Helen; Teat, Simon J.
- J. Mater. Chem., Vol. 16, Issue 26
A new type of paddle-wheel coordination complex
journal, January 2013
- Barrios, Leoní A.; Borilovic, Ivana; Salinas Uber, Jorge
- Dalton Transactions, Vol. 42, Issue 34
Series of Trinuclear Ni II Ln III Ni II Complexes Derived from 2,6-Di(acetoacetyl)pyridine: Synthesis, Structure, and Magnetism
journal, April 2007
- Shiga, Takuya; Ito, Nobuhiro; Hidaka, Akiko
- Inorganic Chemistry, Vol. 46, Issue 9
Series of Comparable Dinuclear Group 4 Neo-pentoxide Precursors for Production of pH Dependent Group 4 Nanoceramic Morphologies
journal, December 2010
- Boyle, Timothy J.; Ottley, Leigh Anna M.; Hoppe, Sarah M.
- Inorganic Chemistry, Vol. 49, Issue 23
The calculation of small molecular interactions by the differences of separate total energies. Some procedures with reduced errors
journal, January 2002
- Boys, S. F.; Bernardi, F.
- Molecular Physics, Vol. 100, Issue 1
Works referencing / citing this record:
Sodalite-like rare-earth carbonates: a study of structural transformation and diluted magnetism
journal, January 2016
- Wang, Yanyan; Han, Tian; Ding, You-Song
- Dalton Transactions, Vol. 45, Issue 3
Thioether-terminated nickel( ii ) coordination clusters with {Ni 6 } horseshoe- and {Ni 8 } rollercoaster-shaped cores
journal, January 2016
- Schmitz, Sebastian; van Leusen, Jan; Ellern, Arkady
- Inorganic Chemistry Frontiers, Vol. 3, Issue 4
{NiII8LnIII6} (Ln = Gd, Dy) rod-like nano-sized heteronuclear coordination clusters with a double carbonate bridge skeleton and remarkable MCE behaviour
journal, January 2016
- Guarda, Eliana; Bader, Katharina; van Slageren, Joris
- Dalton Transactions, Vol. 45, Issue 20
Self-assembly of tetra-nuclear lanthanide clusters via atmospheric CO 2 fixation: interesting solvent-induced structures and magnetic relaxation conversions
journal, January 2018
- Wang, Wen-Min; Wu, Zhi-Lei; Zhang, Ya-Xin
- Inorganic Chemistry Frontiers, Vol. 5, Issue 9
Novel Topologies in Vanadium-bis-β-Diketone Chemistry: A [V4] and a [V6] Metallacyclophane
journal, December 2015
- Borilovic, Ivana; Roubeau, Olivier; Fernández Vidal, Irene
- Magnetochemistry, Vol. 1, Issue 1
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