Draft Genome Sequence of Gordonia sihwensis Strain 9, a Branched Alkane-Degrading Bacterium

Brown, Lisa M.; Gunasekera, Thusitha S.; Striebich, Richard C.; Ruiz, Oscar N.

doi:10.1128/genomeA.00622-16

Title: Draft Genome Sequence of Gordonia sihwensis Strain 9, a Branched Alkane-Degrading Bacterium

Abstract

ABSTRACT Gordonia sihwensis strain 9 is a Gram-positive bacterium capable of efficient aerobic degradation of branched and normal alkanes. The draft genome of G. sihwensis S9 is 4.16 Mb in size, with 3,686 coding sequences and 68.1% G+C content. Alkane monooxygenase and P-450 cytochrome genes required for alkane degradation are predicted in G. sihwensis S9.

Authors:

Brown, Lisa M. ^[1]; Gunasekera, Thusitha S. ^[1]; Striebich, Richard C. ^[1]; Ruiz, Oscar N. ^[2]

University of Dayton Research Institute, Dayton, Ohio, USA
Air Force Research Laboratory, Aerospace Systems Directorate, Fuels and Energy Branch, Wright-Patterson AFB, Ohio, USA

Publication Date:: Thu Jun 30 00:00:00 EDT 2016

Research Org.:: Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)

Sponsoring Org.:: USDOE Office of Science (SC), Biological and Environmental Research (BER). Biological Systems Science Division

OSTI Identifier:: 1786401

Alternate Identifier(s):: OSTI ID: 1629961

Grant/Contract Number:: IAA DE-NA0002320/0002; NA0002320

Resource Type:: Published Article

Journal Name:: Genome Announcements

Additional Journal Information:: Journal Name: Genome Announcements Journal Volume: 4 Journal Issue: 3; Journal ID: ISSN 2169-8287

Publisher:: American Society for Microbiology

Country of Publication:: United States

Language:: English

Subject:: 59 BASIC BIOLOGICAL SCIENCES

Citation Formats


                    Brown, Lisa M., Gunasekera, Thusitha S., Striebich, Richard C., and Ruiz, Oscar N. Draft Genome Sequence of Gordonia sihwensis Strain 9, a Branched Alkane-Degrading Bacterium.  United States: N. p., 2016. 
Web.  doi:10.1128/genomeA.00622-16.

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                    Brown, Lisa M., Gunasekera, Thusitha S., Striebich, Richard C., & Ruiz, Oscar N. Draft Genome Sequence of Gordonia sihwensis Strain 9, a Branched Alkane-Degrading Bacterium.  United States.  https://doi.org/10.1128/genomeA.00622-16

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                    Brown, Lisa M., Gunasekera, Thusitha S., Striebich, Richard C., and Ruiz, Oscar N. Thu .  
"Draft Genome Sequence of Gordonia sihwensis Strain 9, a Branched Alkane-Degrading Bacterium".  United States.  https://doi.org/10.1128/genomeA.00622-16.

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@article{osti_1786401,

  title        = {Draft Genome Sequence of Gordonia sihwensis Strain 9, a Branched Alkane-Degrading Bacterium},

  author       = {Brown, Lisa M. and Gunasekera, Thusitha S. and Striebich, Richard C. and Ruiz, Oscar N.},

  abstractNote = {ABSTRACT Gordonia sihwensis strain 9 is a Gram-positive bacterium capable of efficient aerobic degradation of branched and normal alkanes. The draft genome of G. sihwensis S9 is 4.16 Mb in size, with 3,686 coding sequences and 68.1% G+C content. Alkane monooxygenase and P-450 cytochrome genes required for alkane degradation are predicted in G. sihwensis S9.},

  doi          = {10.1128/genomeA.00622-16},

  journal      = {Genome Announcements},

  number       = 3,

  volume       = 4,

  place        = {United States},

  year         = {Thu Jun 30 00:00:00 EDT 2016},

  month        = {Thu Jun 30 00:00:00 EDT 2016}

}

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Works referenced in this record:

Identification of alkane hydroxylase genes in Rhodococcus sp. strain TMP2 that degrades a branched alkane
journal, April 2008

Takei, Daisuke; Washio, Kenji; Morikawa, Masaaki
Biotechnology Letters, Vol. 30, Issue 8
DOI: 10.1007/s10529-008-9710-9

Characterization of Gordonia sp. strain CC-NAPH129-6 capable of naphthalene degradation
journal, July 2012

Lin, Chun-Liang; Shen, Fo-Ting; Tan, Chen-Chung
Microbiological Research, Vol. 167, Issue 7
DOI: 10.1016/j.micres.2011.12.002

Gordonia sihwensis sp. nov., a novel nitrate-reducing bacterium isolated from a wastewater-treatment bioreactor
journal, September 2003

Kim, Kwang Kyu; Lee, Chang Soo; Kroppenstedt, Reiner M.
International Journal of Systematic and Evolutionary Microbiology, Vol. 53, Issue 5
DOI: 10.1099/ijs.0.02224-0

Draft Genome Sequence of Gordonia alkanivorans Strain CGMCC6845, a Halotolerant Hydrocarbon-Degrading Bacterium
journal, January 2014

Wang, X.; Jin, D.; Zhou, L.
Genome Announcements, Vol. 2, Issue 1
DOI: 10.1128/genomeA.01274-13

Enzymes and genes involved in aerobic alkane degradation
journal, January 2013

Wang, Wanpeng; Shao, Zongze
Frontiers in Microbiology, Vol. 4
DOI: 10.3389/fmicb.2013.00116

The RAST Server: Rapid Annotations using Subsystems Technology
journal, January 2008

Aziz, Ramy K.; Bartels, Daniela; Best, Aaron A.
BMC Genomics, Vol. 9, Issue 1, Article No. 75
DOI: 10.1186/1471-2164-9-75

Transcriptional Profiling Suggests that Multiple Metabolic Adaptations are Required for Effective Proliferation of Pseudomonas aeruginosa in Jet Fuel
journal, November 2013

Gunasekera, Thusitha S.; Striebich, Richard C.; Mueller, Susan S.
Environmental Science & Technology, Vol. 47, Issue 23
DOI: 10.1021/es403163k

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Similar Records

Title: Draft Genome Sequence of Gordonia sihwensis Strain 9, a Branched Alkane-Degrading Bacterium

Abstract

Citation Formats

Identification of alkane hydroxylase genes in Rhodococcus sp. strain TMP2 that degrades a branched alkane journal, April 2008

Characterization of Gordonia sp. strain CC-NAPH129-6 capable of naphthalene degradation journal, July 2012

Gordonia sihwensis sp. nov., a novel nitrate-reducing bacterium isolated from a wastewater-treatment bioreactor journal, September 2003

Draft Genome Sequence of Gordonia alkanivorans Strain CGMCC6845, a Halotolerant Hydrocarbon-Degrading Bacterium journal, January 2014

Enzymes and genes involved in aerobic alkane degradation journal, January 2013

The RAST Server: Rapid Annotations using Subsystems Technology journal, January 2008

Transcriptional Profiling Suggests that Multiple Metabolic Adaptations are Required for Effective Proliferation of Pseudomonas aeruginosa in Jet Fuel journal, November 2013

Identification of alkane hydroxylase genes in Rhodococcus sp. strain TMP2 that degrades a branched alkane
journal, April 2008

Characterization of Gordonia sp. strain CC-NAPH129-6 capable of naphthalene degradation
journal, July 2012

Gordonia sihwensis sp. nov., a novel nitrate-reducing bacterium isolated from a wastewater-treatment bioreactor
journal, September 2003

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journal, January 2014

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