Draft Genome Sequence of Tepidibacillus decaturensis Strain Z9, an Anaerobic, Moderately Thermophilic, and Heterotrophic Bacterium from the Deep Subsurface of the Illinois Basin, USA
Abstract
ABSTRACT The genome of the moderately thermophilic and halotolerant bacterium Tepidibacillus decaturensis strain Z9 was sequenced. The draft genome comprises three scaffolds, for a total of 2.95 Mb. As the first sequenced genome within the genus Tepidibacillus , 2,895 protein-coding genes, 52 tRNA genes, and 3 rRNA operons were predicted.
- Authors:
-
- Energy Biosciences Institute, University of Illinois, Urbana-Champaign, Illinois, USA, Department of Geology, University of Illinois, Urbana-Champaign, Illinois, USA, Carl R. Woese Institute for Genomic Biology, University of Illinois, Urbana-Champaign, Illinois, USA
- Roy J. Carver Biotechnology Center, University of Illinois, Urbana-Champaign, Illinois, USA, High Performance and Research Computing, Office of Information Technology, Rutgers University, New Brunswick, New Jersey, USA
- Department of Geology, University of Illinois, Urbana-Champaign, Illinois, USA
- Energy Biosciences Institute, University of Illinois, Urbana-Champaign, Illinois, USA, Department of Geology, University of Illinois, Urbana-Champaign, Illinois, USA, Carl R. Woese Institute for Genomic Biology, University of Illinois, Urbana-Champaign, Illinois, USA, Roy J. Carver Biotechnology Center, University of Illinois, Urbana-Champaign, Illinois, USA, Department of Microbiology, University of Illinois, Urbana-Champaign, Illinois, USA
- Publication Date:
- Research Org.:
- Univ. of Illinois at Urbana-Champaign, IL (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER). Biological Systems Science Division
- OSTI Identifier:
- 1786380
- Alternate Identifier(s):
- OSTI ID: 1629642
- Grant/Contract Number:
- FE-0002421; FG02-85ER13361
- Resource Type:
- Published Article
- Journal Name:
- Genome Announcements
- Additional Journal Information:
- Journal Name: Genome Announcements Journal Volume: 4 Journal Issue: 2; Journal ID: ISSN 2169-8287
- Publisher:
- American Society for Microbiology
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES
Citation Formats
Dong, Yiran, Chang, Yun-Juan, Sanford, Robert A., and Fouke, Bruce W. Draft Genome Sequence of Tepidibacillus decaturensis Strain Z9, an Anaerobic, Moderately Thermophilic, and Heterotrophic Bacterium from the Deep Subsurface of the Illinois Basin, USA. United States: N. p., 2016.
Web. doi:10.1128/genomeA.00190-16.
Dong, Yiran, Chang, Yun-Juan, Sanford, Robert A., & Fouke, Bruce W. Draft Genome Sequence of Tepidibacillus decaturensis Strain Z9, an Anaerobic, Moderately Thermophilic, and Heterotrophic Bacterium from the Deep Subsurface of the Illinois Basin, USA. United States. https://doi.org/10.1128/genomeA.00190-16
Dong, Yiran, Chang, Yun-Juan, Sanford, Robert A., and Fouke, Bruce W. Thu .
"Draft Genome Sequence of Tepidibacillus decaturensis Strain Z9, an Anaerobic, Moderately Thermophilic, and Heterotrophic Bacterium from the Deep Subsurface of the Illinois Basin, USA". United States. https://doi.org/10.1128/genomeA.00190-16.
@article{osti_1786380,
title = {Draft Genome Sequence of Tepidibacillus decaturensis Strain Z9, an Anaerobic, Moderately Thermophilic, and Heterotrophic Bacterium from the Deep Subsurface of the Illinois Basin, USA},
author = {Dong, Yiran and Chang, Yun-Juan and Sanford, Robert A. and Fouke, Bruce W.},
abstractNote = {ABSTRACT The genome of the moderately thermophilic and halotolerant bacterium Tepidibacillus decaturensis strain Z9 was sequenced. The draft genome comprises three scaffolds, for a total of 2.95 Mb. As the first sequenced genome within the genus Tepidibacillus , 2,895 protein-coding genes, 52 tRNA genes, and 3 rRNA operons were predicted.},
doi = {10.1128/genomeA.00190-16},
journal = {Genome Announcements},
number = 2,
volume = 4,
place = {United States},
year = {Thu Apr 28 00:00:00 EDT 2016},
month = {Thu Apr 28 00:00:00 EDT 2016}
}
Free Publicly Available Full Text
Publisher's Version of Record
https://doi.org/10.1128/genomeA.00190-16
https://doi.org/10.1128/genomeA.00190-16
Other availability
Search WorldCat to find libraries that may hold this journal
Save to My Library
You must Sign In or Create an Account in order to save documents to your library.
Works referenced in this record:
Iterative Correction of Reference Nucleotides (iCORN) using second generation sequencing technology
journal, June 2010
- Otto, Thomas D.; Sanders, Mandy; Berriman, Matthew
- Bioinformatics, Vol. 26, Issue 14
Fe-oxide grain coatings support bacterial Fe-reducing metabolisms in 1.7−2.0 km-deep subsurface quartz arenite sandstone reservoirs of the Illinois Basin (USA)
journal, September 2014
- Dong, Yiran; Sanford, Robert A.; Locke, Randall A.
- Frontiers in Microbiology, Vol. 5
Tepidibacillus fermentans gen. nov., sp. nov.: a moderately thermophilic anaerobic and microaerophilic bacterium from an underground gas storage
journal, July 2013
- Slobodkina, G. B.; Panteleeva, A. N.; Kostrikina, N. A.
- Extremophiles, Vol. 17, Issue 5
IMG: the integrated microbial genomes database and comparative analysis system
journal, December 2011
- Markowitz, V. M.; Chen, I. -M. A.; Palaniappan, K.
- Nucleic Acids Research, Vol. 40, Issue D1
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
journal, December 2012
- Luo, Ruibang; Liu, Binghang; Xie, Yinlong
- GigaScience, Vol. 1, Issue 1
Microorganisms pumping iron: anaerobic microbial iron oxidation and reduction
journal, October 2006
- Weber, Karrie A.; Achenbach, Laurie A.; Coates, John D.
- Nature Reviews Microbiology, Vol. 4, Issue 10, p. 752-764