Serial millisecond crystallography of membrane and soluble protein microcrystals using synchrotron radiation
Abstract
Crystal structure determination of biological macromolecules using the novel technique of serial femtosecond crystallography (SFX) is severely limited by the scarcity of X-ray free-electron laser (XFEL) sources. However, recent and future upgrades render microfocus beamlines at synchrotron-radiation sources suitable for room-temperature serial crystallography data collection also. Owing to the longer exposure times that are needed at synchrotrons, serial data collection is termed serial millisecond crystallography (SMX). As a result, the number of SMX experiments is growing rapidly, with a dozen experiments reported so far. Here, the first high-viscosity injector-based SMX experiments carried out at a US synchrotron source, the Advanced Photon Source (APS), are reported. Microcrystals (5–20 µm) of a wide variety of proteins, including lysozyme, thaumatin, phycocyanin, the human A2A adenosine receptor (A2AAR), the soluble fragment of the membrane lipoprotein Flpp3 and proteinase K, were screened. Crystals suspended in lipidic cubic phase (LCP) or a high-molecular-weight poly(ethylene oxide) (PEO; molecular weight 8 000 000) were delivered to the beam using a high-viscosity injector. In-house data-reduction (hit-finding) software developed at APS as well as the SFX data-reduction and analysis software suites Cheetah and CrystFEL enabled efficient on-site SMX data monitoring, reduction and processing. Complete data sets were collected for A2AAR,more »
- Authors:
-
more »
- Arizona State Univ., Tempe, AZ (United States)
- Arizona State Univ., Tempe, AZ (United States); National Cancer Institute, Frederick, MD (United States)
- Argonne National Lab. (ANL), Lemont, IL (United States)
- Univ. of Southern California, Los Angeles, CA (United States)
- Paul Scherrer Inst. (PSI), Villigen (Switzerland)
- Publication Date:
- Research Org.:
- Argonne National Laboratory (ANL), Argonne, IL (United States)
- Sponsoring Org.:
- National Science Foundation (NSF); National Institutes of Health (NIH), National Cancer Institute; National Institutes of Health (NIH); USDOE
- OSTI Identifier:
- 1374440
- Grant/Contract Number:
- AC02-06CH11357
- Resource Type:
- Accepted Manuscript
- Journal Name:
- IUCrJ
- Additional Journal Information:
- Journal Volume: 4; Journal Issue: 4; Journal ID: ISSN 2052-2525
- Publisher:
- International Union of Crystallography
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CHEMISTRY; 46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND TECHNOLOGY; serial millisecond crystallography; synchrotron radiation; Advanced Photon Source; high-viscosity injector
Citation Formats
Martin-Garcia, Jose M., Conrad, Chelsie E., Nelson, Garrett, Stander, Natasha, Zatsepin, Nadia A., Zook, James, Zhu, Lan, Geiger, James, Chun, Eugene, Kissick, David, Hilgart, Mark C., Ogata, Craig, Ishchenko, Andrii, Nagaratnam, Nirupa, Roy-Chowdhury, Shatabdi, Coe, Jesse, Subramanian, Ganesh, Schaffer, Alexander, James, Daniel, Ketwala, Gihan, Venugopalan, Nagarajan, Xu, Shenglan, Corcoran, Stephen, Ferguson, Dale, Weierstall, Uwe, Spence, John C. H., Cherezov, Vadim, Fromme, Petra, Fischetti, Robert F., and Liu, Wei. Serial millisecond crystallography of membrane and soluble protein microcrystals using synchrotron radiation. United States: N. p., 2017.
Web. doi:10.1107/S205225251700570X.
Martin-Garcia, Jose M., Conrad, Chelsie E., Nelson, Garrett, Stander, Natasha, Zatsepin, Nadia A., Zook, James, Zhu, Lan, Geiger, James, Chun, Eugene, Kissick, David, Hilgart, Mark C., Ogata, Craig, Ishchenko, Andrii, Nagaratnam, Nirupa, Roy-Chowdhury, Shatabdi, Coe, Jesse, Subramanian, Ganesh, Schaffer, Alexander, James, Daniel, Ketwala, Gihan, Venugopalan, Nagarajan, Xu, Shenglan, Corcoran, Stephen, Ferguson, Dale, Weierstall, Uwe, Spence, John C. H., Cherezov, Vadim, Fromme, Petra, Fischetti, Robert F., & Liu, Wei. Serial millisecond crystallography of membrane and soluble protein microcrystals using synchrotron radiation. United States. https://doi.org/10.1107/S205225251700570X
Martin-Garcia, Jose M., Conrad, Chelsie E., Nelson, Garrett, Stander, Natasha, Zatsepin, Nadia A., Zook, James, Zhu, Lan, Geiger, James, Chun, Eugene, Kissick, David, Hilgart, Mark C., Ogata, Craig, Ishchenko, Andrii, Nagaratnam, Nirupa, Roy-Chowdhury, Shatabdi, Coe, Jesse, Subramanian, Ganesh, Schaffer, Alexander, James, Daniel, Ketwala, Gihan, Venugopalan, Nagarajan, Xu, Shenglan, Corcoran, Stephen, Ferguson, Dale, Weierstall, Uwe, Spence, John C. H., Cherezov, Vadim, Fromme, Petra, Fischetti, Robert F., and Liu, Wei. Wed .
"Serial millisecond crystallography of membrane and soluble protein microcrystals using synchrotron radiation". United States. https://doi.org/10.1107/S205225251700570X. https://www.osti.gov/servlets/purl/1374440.
@article{osti_1374440,
title = {Serial millisecond crystallography of membrane and soluble protein microcrystals using synchrotron radiation},
author = {Martin-Garcia, Jose M. and Conrad, Chelsie E. and Nelson, Garrett and Stander, Natasha and Zatsepin, Nadia A. and Zook, James and Zhu, Lan and Geiger, James and Chun, Eugene and Kissick, David and Hilgart, Mark C. and Ogata, Craig and Ishchenko, Andrii and Nagaratnam, Nirupa and Roy-Chowdhury, Shatabdi and Coe, Jesse and Subramanian, Ganesh and Schaffer, Alexander and James, Daniel and Ketwala, Gihan and Venugopalan, Nagarajan and Xu, Shenglan and Corcoran, Stephen and Ferguson, Dale and Weierstall, Uwe and Spence, John C. H. and Cherezov, Vadim and Fromme, Petra and Fischetti, Robert F. and Liu, Wei},
abstractNote = {Crystal structure determination of biological macromolecules using the novel technique of serial femtosecond crystallography (SFX) is severely limited by the scarcity of X-ray free-electron laser (XFEL) sources. However, recent and future upgrades render microfocus beamlines at synchrotron-radiation sources suitable for room-temperature serial crystallography data collection also. Owing to the longer exposure times that are needed at synchrotrons, serial data collection is termed serial millisecond crystallography (SMX). As a result, the number of SMX experiments is growing rapidly, with a dozen experiments reported so far. Here, the first high-viscosity injector-based SMX experiments carried out at a US synchrotron source, the Advanced Photon Source (APS), are reported. Microcrystals (5–20 µm) of a wide variety of proteins, including lysozyme, thaumatin, phycocyanin, the human A2A adenosine receptor (A2AAR), the soluble fragment of the membrane lipoprotein Flpp3 and proteinase K, were screened. Crystals suspended in lipidic cubic phase (LCP) or a high-molecular-weight poly(ethylene oxide) (PEO; molecular weight 8 000 000) were delivered to the beam using a high-viscosity injector. In-house data-reduction (hit-finding) software developed at APS as well as the SFX data-reduction and analysis software suites Cheetah and CrystFEL enabled efficient on-site SMX data monitoring, reduction and processing. Complete data sets were collected for A2AAR, phycocyanin, Flpp3, proteinase K and lysozyme, and the structures of A2AAR, phycocyanin, proteinase K and lysozyme were determined at 3.2, 3.1, 2.65 and 2.05 Å resolution, respectively. The data demonstrate the feasibility of serial millisecond crystallography from 5–20 µm crystals using a high-viscosity injector at APS. The resolution of the crystal structures obtained in this study was dictated by the current flux density and crystal size, but upcoming developments in beamline optics and the planned APS-U upgrade will increase the intensity by two orders of magnitude. Furthermore, these developments will enable structure determination from smaller and/or weakly diffracting microcrystals.},
doi = {10.1107/S205225251700570X},
journal = {IUCrJ},
number = 4,
volume = 4,
place = {United States},
year = {Wed May 24 00:00:00 EDT 2017},
month = {Wed May 24 00:00:00 EDT 2017}
}
Web of Science
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Advances and opportunities in ultrafast X-ray crystallography and ultrafast structural optical crystallography of nuclear and electronic protein dynamics
journal, September 2019
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Transforming X-ray detection with hybrid photon counting detectors
journal, April 2019
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Successful sample preparation for serial crystallography experiments
journal, November 2019
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Stable sample delivery in viscous media via a capillary for serial crystallography
journal, February 2020
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Toward G protein-coupled receptor structure-based drug design using X-ray lasers
journal, October 2019
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Measuring energy-dependent photoelectron escape in microcrystals
journal, January 2020
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Sample delivery for serial crystallography at free-electron lasers and synchrotrons
journal, January 2019
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A guide to sample delivery systems for serial crystallography
journal, August 2019
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Sample Delivery Media for Serial Crystallography
journal, March 2019
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Polysaccharide-Based Injection Matrix for Serial Crystallography
journal, May 2020
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Viscosity-adjustable grease matrices for serial nanocrystallography
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A shared vision for macromolecular crystallography over the next five years
journal, November 2019
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An outlook on using serial femtosecond crystallography in drug discovery
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MicroED methodology and development
journal, July 2019
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Fixed-target serial oscillation crystallography at room temperature
journal, February 2019
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Role of Extracellular Loops and Membrane Lipids for Ligand Recognition in the Neuronal Adenosine Receptor Type 2A: An Enhanced Sampling Simulation Study
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MicroED methodology and development
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Sample manipulation and data assembly for robust microcrystal synchrotron crystallography
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Fixed-target serial oscillation crystallography at room temperature
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Comparing serial X-ray crystallography and microcrystal electron diffraction (MicroED) as methods for routine structure determination from small macromolecular crystals
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Shortening injection matrix for serial crystallography
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High-viscosity injector-based pink-beam serial crystallography of microcrystals at a synchrotron radiation source
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Strategies for sample delivery for femtosecond crystallography
text, January 2019
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Fixed-target serial oscillation crystallography at room temperature
text, January 2019
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