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Title: Engineering E. coli–E. coli cocultures for production of muconic acid from glycerol

Abstract

cis, cis-Muconic acid is an important chemical that can be biosynthesized from simple substrates in engineered microorganisms. Recently, it has been shown that engineering microbial cocultures is an emerging and promising approach for biochemical production. In this study, we aim to explore the potential of the E. coli–E. coli coculture system to use a single renewable carbon source, glycerol, for the production of value-added product cis, cis-muconic acid. As a result, two coculture engineering strategies were investigated. In the first strategy, an E. coli strain containing the complete biosynthesis pathway was co-cultivated with another E. coli strain containing only a heterologous intermediate-to-product biosynthetic pathway. In the second strategy, the upstream and downstream pathways were accommodated in two separate E. coli strains, each of which was dedicated to one portion of the biosynthesis process. Compared with the monoculture approach, both coculture engineering strategies improved the production significantly. Using a batch bioreactor, the engineered coculture achieved a 2 g/L muconic acid production with a yield of 0.1 g/g. In conclusion, our results demonstrate that coculture engineering is a viable option for producing muconic acid from glycerol. Moreover, microbial coculture systems are shown to have the potential for converting single carbon source tomore » value-added products.« less

Authors:
ORCiD logo; ; ;
Publication Date:
Research Org.:
Massachusetts Inst. of Technology (MIT), Cambridge, MA (United States)
Sponsoring Org.:
USDOE
OSTI Identifier:
1618794
Alternate Identifier(s):
OSTI ID: 1324979
Grant/Contract Number:  
SC0006698
Resource Type:
Published Article
Journal Name:
Microbial Cell Factories
Additional Journal Information:
Journal Name: Microbial Cell Factories Journal Volume: 14 Journal Issue: 1; Journal ID: ISSN 1475-2859
Publisher:
Springer Science + Business Media
Country of Publication:
United Kingdom
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; metabolic engineering; E. coli; coculture; muconic acid; glycerol

Citation Formats

Zhang, Haoran, Li, Zhengjun, Pereira, Brian, and Stephanopoulos, Gregory. Engineering E. coli–E. coli cocultures for production of muconic acid from glycerol. United Kingdom: N. p., 2015. Web. doi:10.1186/s12934-015-0319-0.
Zhang, Haoran, Li, Zhengjun, Pereira, Brian, & Stephanopoulos, Gregory. Engineering E. coli–E. coli cocultures for production of muconic acid from glycerol. United Kingdom. https://doi.org/10.1186/s12934-015-0319-0
Zhang, Haoran, Li, Zhengjun, Pereira, Brian, and Stephanopoulos, Gregory. Tue . "Engineering E. coli–E. coli cocultures for production of muconic acid from glycerol". United Kingdom. https://doi.org/10.1186/s12934-015-0319-0.
@article{osti_1618794,
title = {Engineering E. coli–E. coli cocultures for production of muconic acid from glycerol},
author = {Zhang, Haoran and Li, Zhengjun and Pereira, Brian and Stephanopoulos, Gregory},
abstractNote = {cis, cis-Muconic acid is an important chemical that can be biosynthesized from simple substrates in engineered microorganisms. Recently, it has been shown that engineering microbial cocultures is an emerging and promising approach for biochemical production. In this study, we aim to explore the potential of the E. coli–E. coli coculture system to use a single renewable carbon source, glycerol, for the production of value-added product cis, cis-muconic acid. As a result, two coculture engineering strategies were investigated. In the first strategy, an E. coli strain containing the complete biosynthesis pathway was co-cultivated with another E. coli strain containing only a heterologous intermediate-to-product biosynthetic pathway. In the second strategy, the upstream and downstream pathways were accommodated in two separate E. coli strains, each of which was dedicated to one portion of the biosynthesis process. Compared with the monoculture approach, both coculture engineering strategies improved the production significantly. Using a batch bioreactor, the engineered coculture achieved a 2 g/L muconic acid production with a yield of 0.1 g/g. In conclusion, our results demonstrate that coculture engineering is a viable option for producing muconic acid from glycerol. Moreover, microbial coculture systems are shown to have the potential for converting single carbon source to value-added products.},
doi = {10.1186/s12934-015-0319-0},
journal = {Microbial Cell Factories},
number = 1,
volume = 14,
place = {United Kingdom},
year = {Tue Sep 15 00:00:00 EDT 2015},
month = {Tue Sep 15 00:00:00 EDT 2015}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record
https://doi.org/10.1186/s12934-015-0319-0

Citation Metrics:
Cited by: 70 works
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Works referenced in this record:

Microbial synthesis of cis,cis-muconic acid by Sphingobacterium sp. GCG generated from effluent of a styrene monomer (SM) production plant
journal, December 2004


OPTIMIZATION OF MEDIUM COMPOSITION FOR cis,cis -MUCONIC ACID PRODUCTION BY A Pseudomonas sp. MUTANT USING STATISTICAL METHODS
journal, December 2013

  • Xie, Neng-Zhong; Wang, Qing-Yan; Zhu, Qi-Xia
  • Preparative Biochemistry and Biotechnology, Vol. 44, Issue 4
  • DOI: 10.1080/10826068.2013.829497

Distributing a metabolic pathway among a microbial consortium enhances production of natural products
journal, January 2015

  • Zhou, Kang; Qiao, Kangjian; Edgar, Steven
  • Nature Biotechnology, Vol. 33, Issue 4
  • DOI: 10.1038/nbt.3095

Extending shikimate pathway for the production of muconic acid and its precursor salicylic acid in Escherichia coli
journal, May 2014


Benzene-Free Synthesis of Adipic Acid
journal, April 2002

  • Niu, W.; Draths, K. M.; Frost, J. W.
  • Biotechnology Progress, Vol. 18, Issue 2, p. 201-211
  • DOI: 10.1021/bp010179x

Glycerol: A promising and abundant carbon source for industrial microbiology
journal, January 2009


A Novel Muconic Acid Biosynthesis Approach by Shunting Tryptophan Biosynthesis via Anthranilate
journal, April 2013

  • Sun, Xinxiao; Lin, Yuheng; Huang, Qin
  • Applied and Environmental Microbiology, Vol. 79, Issue 13
  • DOI: 10.1128/AEM.00859-13

Engineering Escherichia coli coculture systems for the production of biochemical products
journal, June 2015

  • Zhang, Haoran; Pereira, Brian; Li, Zhengjun
  • Proceedings of the National Academy of Sciences, Vol. 112, Issue 27
  • DOI: 10.1073/pnas.1506781112

Metabolic engineering of muconic acid production in Saccharomyces cerevisiae
journal, January 2013


Production of cis,cis-muconate from benzoate and 2-fluoro-cis,cis-muconate from 3-fluorobenzoate by 3-chlorobenzoate degrading bacteria
journal, November 1984

  • Schmidt, Eberhard; Knackmuss, Hans -Joachim
  • Applied Microbiology and Biotechnology, Vol. 20, Issue 5
  • DOI: 10.1007/BF00270599

Tuning genetic control through promoter engineering
journal, August 2005

  • Alper, H.; Fischer, C.; Nevoigt, E.
  • Proceedings of the National Academy of Sciences, Vol. 102, Issue 36, p. 12678-12683
  • DOI: 10.1073/pnas.0504604102

Value-added uses for crude glycerol--a byproduct of biodiesel production
journal, January 2012

  • Yang, Fangxia; Hanna, Milford A.; Sun, Runcang
  • Biotechnology for Biofuels, Vol. 5, Issue 1
  • DOI: 10.1186/1754-6834-5-13

Potential production platform of n-butanol in Escherichia coli
journal, January 2015


A prokaryotic membrane anchor sequence: carboxyl terminus of bacteriophage f1 gene III protein retains it in the membrane.
journal, September 1982

  • Boeke, J. D.; Model, P.
  • Proceedings of the National Academy of Sciences, Vol. 79, Issue 17
  • DOI: 10.1073/pnas.79.17.5200

Rational, combinatorial, and genomic approaches for engineering L-tyrosine production in Escherichia coli
journal, August 2012

  • Santos, C. N. S.; Xiao, W.; Stephanopoulos, G.
  • Proceedings of the National Academy of Sciences, Vol. 109, Issue 34
  • DOI: 10.1073/pnas.1206346109

Toward biotechnological production of adipic acid and precursors from biorenewables
journal, August 2013


Production of bulk chemicals via novel metabolic pathways in microorganisms
journal, November 2013


Enhanced production of cis,cis-muconate in a cell-recycle bioreactor
journal, January 1997


Biosynthesis of cis, cis-Muconic Acid and Its Aromatic Precursors, Catechol and Protocatechuic Acid, from Renewable Feedstocks by Saccharomyces cerevisiae
journal, September 2012

  • Weber, Christian; Brückner, Christine; Weinreb, Sheila
  • Applied and Environmental Microbiology, Vol. 78, Issue 23, p. 8421-8430
  • DOI: 10.1128/AEM.01983-12

Benzene-Free Synthesis of Catechol:  Interfacing Microbial and Chemical Catalysis
journal, March 2005

  • Li, Wensheng; Xie, Dongming; Frost, J. W.
  • Journal of the American Chemical Society, Vol. 127, Issue 9
  • DOI: 10.1021/ja045148n

Environmentally compatible synthesis of adipic acid from D-glucose
journal, January 1994

  • Draths, Karen M.; Frost, John W.
  • Journal of the American Chemical Society, Vol. 116, Issue 1, p. 399-400
  • DOI: 10.1021/ja00080a057

A substrate-selective co-fermentation strategy with Escherichia coli produces lactate by simultaneously consuming xylose and glucose
journal, February 2009

  • Eiteman, Mark A.; Lee, Sarah A.; Altman, Ronni
  • Biotechnology and Bioengineering, Vol. 102, Issue 3
  • DOI: 10.1002/bit.22103

Microbial synthesis of cis,cis-muconic acid from benzoate by Sphingobacterium sp. mutants
journal, April 2006

  • Wu, Chun-Ming; Wu, Chang-Chan; Su, Chien-Chou
  • Biochemical Engineering Journal, Vol. 29, Issue 1-2, p. 35-40
  • DOI: 10.1016/j.bej.2005.02.034

Biotechnological production of muconic acid: current status and future prospects
journal, May 2014


Works referencing / citing this record:

Co-culture engineering for microbial biosynthesis of 3-amino-benzoic acid in Escherichia coli
journal, June 2016


Establishing microbial co‐cultures for 3‐hydroxybenzoic acid biosynthesis on glycerol
journal, April 2019

  • Zhou, Yiyao; Li, Zhenghong; Wang, Xiaonan
  • Engineering in Life Sciences, Vol. 19, Issue 5
  • DOI: 10.1002/elsc.201800195

Engineering co-culture system for production of apigetrin in Escherichia coli
journal, January 2018

  • Thuan, Nguyen Huy; Chaudhary, Amit Kumar; Van Cuong, Duong
  • Journal of Industrial Microbiology & Biotechnology, Vol. 45, Issue 3
  • DOI: 10.1007/s10295-018-2012-x

Engineering prokaryotic transcriptional activators as metabolite biosensors in yeast
journal, September 2016

  • Skjoedt, Mette L.; Snoek, Tim; Kildegaard, Kanchana R.
  • Nature Chemical Biology, Vol. 12, Issue 11
  • DOI: 10.1038/nchembio.2177

Sensor-regulator and RNAi based bifunctional dynamic control network for engineered microbial synthesis
journal, August 2018


Metabolic engineering of Escherichia coli for shikimate pathway derivative production from glucose–xylose co-substrate
journal, January 2020


Lignin Valorization: Two Hybrid Biochemical Routes for the Conversion of Polymeric Lignin into Value-added Chemicals
journal, August 2017


Requirement of a Functional Flavin Mononucleotide Prenyltransferase for the Activity of a Bacterial Decarboxylase in a Heterologous Muconic Acid Pathway in Saccharomyces cerevisiae
journal, March 2017

  • Weber, Heike E.; Gottardi, Manuela; Brückner, Christine
  • Applied and Environmental Microbiology, Vol. 83, Issue 10
  • DOI: 10.1128/aem.03472-16

Complete Biosynthesis of Anthocyanins Using E. coli Polycultures
journal, June 2017

  • Jones, J. Andrew; Vernacchio, Victoria R.; Collins, Shannon M.
  • mBio, Vol. 8, Issue 3
  • DOI: 10.1128/mbio.00621-17

Engineering of a microbial coculture of Escherichia coli strains for the biosynthesis of resveratrol
journal, September 2016

  • Camacho-Zaragoza, José M.; Hernández-Chávez, Georgina; Moreno-Avitia, Fabian
  • Microbial Cell Factories, Vol. 15, Issue 1
  • DOI: 10.1186/s12934-016-0562-z

Metabolic engineering of Corynebacterium glutamicum for the production of cis, cis-muconic acid from lignin
journal, July 2018


Metabolic pairing of aerobic and anaerobic production in a one-pot batch cultivation
journal, July 2018

  • Salmela, Milla; Lehtinen, Tapio; Efimova, Elena
  • Biotechnology for Biofuels, Vol. 11, Issue 1
  • DOI: 10.1186/s13068-018-1186-9