DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Analytical Performance Characteristics of the Cepheid GeneXpert Ebola Assay for the Detection of Ebola Virus

Authors:
 [1];  [2];  [3];  [4];  [5];  [4];  [4];  [5];  [5];  [5];  [5];  [5];  [5];  [6];  [6];  [6];  [7];  [8];  [9];  [10] more »;  [5] « less
  1. Stanford Univ. School of Medicine, CA (United States). Dept. of Pathology; Stanford Univ. School of Medicine, CA (United States). Dept. of Medicine, Division of Infectious Diseases and Geographic Medicine
  2. Stanford Univ. School of Medicine, CA (United States). Dept. of Pathology
  3. Stanford Univ. School of Medicine, CA (United States). Dept. of Pathology; Stanford Health Care and Stanford Children’s Health, Palo Alto, CA (United States)
  4. Cepheid, Solna (Sweden)
  5. Cepheid, Sunnyvale, CA (United States)
  6. Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)
  7. Univ. of Texas Medical Branch, Galveston, TX (United States)
  8. Public Health Agency of Canada, Winnipeg, MB (Canada)
  9. Public Health Agency of Canada, Winnipeg, MB (Canada)
  10. Public Health Agency of Sweden, Solna (Sweden)
Publication Date:
Research Org.:
Lawrence Livermore National Laboratory (LLNL), Livermore, CA (United States)
Sponsoring Org.:
Bill and Melinda Gates Foundation; USDOE National Nuclear Security Administration (NNSA)
OSTI Identifier:
1259525
Alternate Identifier(s):
OSTI ID: 1474356
Report Number(s):
LLNL-JRNL-675675
Journal ID: ISSN 1932-6203
Grant/Contract Number:  
AC52-07NA27344
Resource Type:
Accepted Manuscript
Journal Name:
PLoS ONE
Additional Journal Information:
Journal Volume: 10; Journal Issue: 11; Journal ID: ISSN 1932-6203
Publisher:
Public Library of Science
Country of Publication:
United States
Language:
English
Subject:
60 APPLIED LIFE SCIENCES; blood; Ebola virus; nucleic acids; viral nucleic acid; RNA viruses; reverse transcriptase-polymerase chain reaction; viral replication; viral genomics; Biological and medical sciences

Citation Formats

Pinsky, Benjamin A., Sahoo, Malaya K., Sandlund, Johanna, Kleman, Marika, Kulkarni, Medha, Grufman, Per, Nygren, Malin, Kwiatkowski, Robert, Baron, Ellen Jo, Tenover, Fred, Denison, Blake, Higuchi, Russell, Van Atta, Reuel, Beer, Neil Reginald, Carrillo, Alda Celena, Naraghi-Arani, Pejman, Mire, Chad E., Ranadheera, Charlene, Grolla, Allen, Lagerqvist, Nina, and Persing, David H. Analytical Performance Characteristics of the Cepheid GeneXpert Ebola Assay for the Detection of Ebola Virus. United States: N. p., 2015. Web. doi:10.1371/journal.pone.0142216.
Pinsky, Benjamin A., Sahoo, Malaya K., Sandlund, Johanna, Kleman, Marika, Kulkarni, Medha, Grufman, Per, Nygren, Malin, Kwiatkowski, Robert, Baron, Ellen Jo, Tenover, Fred, Denison, Blake, Higuchi, Russell, Van Atta, Reuel, Beer, Neil Reginald, Carrillo, Alda Celena, Naraghi-Arani, Pejman, Mire, Chad E., Ranadheera, Charlene, Grolla, Allen, Lagerqvist, Nina, & Persing, David H. Analytical Performance Characteristics of the Cepheid GeneXpert Ebola Assay for the Detection of Ebola Virus. United States. https://doi.org/10.1371/journal.pone.0142216
Pinsky, Benjamin A., Sahoo, Malaya K., Sandlund, Johanna, Kleman, Marika, Kulkarni, Medha, Grufman, Per, Nygren, Malin, Kwiatkowski, Robert, Baron, Ellen Jo, Tenover, Fred, Denison, Blake, Higuchi, Russell, Van Atta, Reuel, Beer, Neil Reginald, Carrillo, Alda Celena, Naraghi-Arani, Pejman, Mire, Chad E., Ranadheera, Charlene, Grolla, Allen, Lagerqvist, Nina, and Persing, David H. Thu . "Analytical Performance Characteristics of the Cepheid GeneXpert Ebola Assay for the Detection of Ebola Virus". United States. https://doi.org/10.1371/journal.pone.0142216. https://www.osti.gov/servlets/purl/1259525.
@article{osti_1259525,
title = {Analytical Performance Characteristics of the Cepheid GeneXpert Ebola Assay for the Detection of Ebola Virus},
author = {Pinsky, Benjamin A. and Sahoo, Malaya K. and Sandlund, Johanna and Kleman, Marika and Kulkarni, Medha and Grufman, Per and Nygren, Malin and Kwiatkowski, Robert and Baron, Ellen Jo and Tenover, Fred and Denison, Blake and Higuchi, Russell and Van Atta, Reuel and Beer, Neil Reginald and Carrillo, Alda Celena and Naraghi-Arani, Pejman and Mire, Chad E. and Ranadheera, Charlene and Grolla, Allen and Lagerqvist, Nina and Persing, David H.},
abstractNote = {},
doi = {10.1371/journal.pone.0142216},
journal = {PLoS ONE},
number = 11,
volume = 10,
place = {United States},
year = {Thu Nov 12 00:00:00 EST 2015},
month = {Thu Nov 12 00:00:00 EST 2015}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record

Citation Metrics:
Cited by: 35 works
Citation information provided by
Web of Science

Save / Share:

Works referenced in this record:

High‐Throughput Molecular Detection of Hemorrhagic Fever Virus Threats with Applications for Outbreak Settings
journal, November 2007

  • Towner, Jonathan S.; Sealy, Tara K.; Ksiazek, Thomas G.
  • The Journal of Infectious Diseases, Vol. 196, Issue s2
  • DOI: 10.1086/520601

Assessment of the Risk of Ebola Virus Transmission from Bodily Fluids and Fomites
journal, November 2007

  • Bausch, Daniel G.; Towner, Jonathan S.; Dowell, Scott F.
  • The Journal of Infectious Diseases, Vol. 196, Issue s2
  • DOI: 10.1086/520545

Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak
journal, August 2014


Comprehensive Panel of Real-Time TaqMan™ Polymerase Chain Reaction Assays for Detection and Absolute Quantification of Filoviruses, Arenaviruses, and New World Hantaviruses
journal, May 2010

  • Jahrling, Jordan; Buckley-Beason, Valerie A.; Schoepp, Randal J.
  • The American Journal of Tropical Medicine and Hygiene, Vol. 82, Issue 5
  • DOI: 10.4269/ajtmh.2010.09-0636

Risk of Misinterpretation of Ebola Virus PCR Results After rVSV ZEBOV–GP Vaccination
journal, February 2015

  • Cnops, Lieselotte; Gerard, Michèle; Vandenberg, Olivier
  • Clinical Infectious Diseases, Vol. 60, Issue 11
  • DOI: 10.1093/cid/civ131

Serology and cytokine profiles in patients infected with the newly discovered Bundibugyo ebolavirus
journal, February 2012


Discussions and decisions of the 2012–2014 International Committee on Taxonomy of Viruses (ICTV) Filoviridae Study Group, January 2012–June 2013
journal, October 2013

  • Bukreyev, Alexander A.; Chandran, Kartik; Dolnik, Olga
  • Archives of Virology, Vol. 159, Issue 4
  • DOI: 10.1007/s00705-013-1846-9

Identification of essential outstanding questions for an adequate European laboratory response to Ebolavirus Zaire West Africa 2014
journal, January 2015


Ebola and Marburg haemorrhagic fever
journal, March 2015


ReEBOV Antigen Rapid Test kit for point-of-care and laboratory-based testing for Ebola virus disease: a field validation study
journal, August 2015


Genetic diversity and evolutionary dynamics of Ebola virus in Sierra Leone
journal, May 2015


Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone
journal, June 2015


Live attenuated recombinant vaccine protects nonhuman primates against Ebola and Marburg viruses
journal, June 2005

  • Jones, Steven M.; Feldmann, Heinz; Ströher, Ute
  • Nature Medicine, Vol. 11, Issue 7
  • DOI: 10.1038/nm1258

Ebola virus: from discovery to vaccine
journal, August 2003

  • Feldmann, Heinz; Jones, Steven; Klenk, Hans-Dieter
  • Nature Reviews Immunology, Vol. 3, Issue 8
  • DOI: 10.1038/nri1154

Physicochemical inactivation of Lassa, Ebola, and Marburg viruses and effect on clinical laboratory analyses.
journal, January 1984


Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone
journal, June 2015


Identification of essential outstanding questions for an adequate European laboratory response to Ebolavirus Zaire West Africa 2014
journal, January 2015


Ebola and Marburg haemorrhagic fever
journal, March 2015


Serology and cytokine profiles in patients infected with the newly discovered Bundibugyo ebolavirus
journal, February 2012


Rapid diagnostics for Ebola in emergency settings
journal, August 2015


Genetic diversity and evolutionary dynamics of Ebola virus in Sierra Leone
journal, May 2015


Shedding of Ebola Virus in an Asymptomatic Pregnant Woman
journal, June 2015

  • Akerlund, Emma; Prescott, Joseph; Tampellini, Livia
  • New England Journal of Medicine, Vol. 372, Issue 25
  • DOI: 10.1056/nejmc1503275

Assessment of the Risk of Ebola Virus Transmission from Bodily Fluids and Fomites
journal, November 2007

  • Bausch, Daniel G.; Towner, Jonathan S.; Dowell, Scott F.
  • The Journal of Infectious Diseases, Vol. 196, Issue s2
  • DOI: 10.1086/520545

High‐Throughput Molecular Detection of Hemorrhagic Fever Virus Threats with Applications for Outbreak Settings
journal, November 2007

  • Towner, Jonathan S.; Sealy, Tara K.; Ksiazek, Thomas G.
  • The Journal of Infectious Diseases, Vol. 196, Issue s2
  • DOI: 10.1086/520601

Risk of Misinterpretation of Ebola Virus PCR Results After rVSV ZEBOV–GP Vaccination
journal, February 2015

  • Cnops, Lieselotte; Gerard, Michèle; Vandenberg, Olivier
  • Clinical Infectious Diseases, Vol. 60, Issue 11
  • DOI: 10.1093/cid/civ131

Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak
journal, August 2014


Reidentification of Ebola Virus E718 and ME as Ebola Virus/H.sapiens-tc/COD/1976/Yambuku-Ecran
journal, November 2014


First International Quality Assurance Study on the Rapid Detection of Viral Agents of Bioterrorism
journal, April 2004


Works referencing / citing this record:

Translating RNA sequencing into clinical diagnostics: opportunities and challenges
journal, March 2016

  • Byron, Sara A.; Van Keuren-Jensen, Kendall R.; Engelthaler, David M.
  • Nature Reviews Genetics, Vol. 17, Issue 5
  • DOI: 10.1038/nrg.2016.10

Paper-based RNA detection and multiplexed analysis for Ebola virus diagnostics
journal, May 2017


Virus-encoded miRNAs in Ebola virus disease
journal, April 2018


Recent advances in the development and evaluation of molecular diagnostics for Ebola virus disease
journal, March 2019


Diagnosis and management of Ebola samples in the laboratory
journal, May 2016

  • de La Vega, Marc-Antoine; Bello, Alexander; Chaillet, Pascale
  • Expert Review of Anti-infective Therapy, Vol. 14, Issue 6
  • DOI: 10.1080/14787210.2016.1176912

Molecular Diagnostic Field Test for Point-of-Care Detection of Ebola Virus Directly From Blood
journal, September 2016

  • Benzine, Jason W.; Brown, Kerry M.; Agans, Krystle N.
  • Journal of Infectious Diseases, Vol. 214, Issue suppl 3
  • DOI: 10.1093/infdis/jiw330

Pan-filovirus one-step reverse transcription-polymerase chain reaction screening assay
preprint, March 2019


Diagnosis of Ebola Virus Disease: Past, Present, and Future
journal, July 2016

  • Broadhurst, M. Jana; Brooks, Tim J. G.; Pollock, Nira R.
  • Clinical Microbiology Reviews, Vol. 29, Issue 4
  • DOI: 10.1128/cmr.00003-16

Development and Evaluation of a Duo Zaire ebolavirus Real-Time RT-PCR Assay Targeting Two Regions within the Genome
journal, December 2019


Responding to ever-changing epidemiological dynamics of Ebola virus disease
journal, November 2016


The etiology of Ebola virus disease-like illnesses in Ebola virusnegative patients from Sierra Leone
journal, April 2016


Development of Mobile Laboratory for Viral Hemorrhagic Fever Detection in Africa
text, January 2018

  • Weidmann, Manfred; Faye, Ousmane; Faye, Oumar
  • Robert Koch-Institut
  • DOI: 10.25646/5992

Development and Evaluation of a Duo Zaire ebolavirus Real-Time RT-PCR Assay Targeting Two Regions within the Genome
journal, December 2019