High-quality permanent draft genome sequence of Bradyrhizobium sp. Ai1a-2; a microsymbiont of Andira inermis discovered in Costa Rica
Abstract
Bradyrhizobium sp. Ai1a-2 is is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective nitrogen fixing root nodule of Andira inermis collected from Tres Piedras in Costa Rica. In this report we describe, for the first time, the genome sequence information and annotation of this legume microsymbiont. The 9,029,266 bp genome has a GC content of 62.56% with 247 contigs arranged into 246 scaffolds. The assembled genome contains 8,482 protein-coding genes and 102 RNA-only encoding genes. Lastly, this rhizobial genome was sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) project proposal.
- Authors:
-
- Murdoch Univ. (Australia)
- Binghamton Univ., NY (United States)
- DOE Joint Genome Inst., Walnut Creek, CA (United States)
- Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
- King Abdulaziz Univ., Jeddah (Saudi Arabia); Jeddah Univ. (Saudi Arabia)
- Jeddah Univ. (Saudi Arabia); King Abdulaziz Univ., Jeddah (Saudi Arabia)
- DOE Joint Genome Inst., Walnut Creek, CA (United States); King Abdulaziz Univ., Jeddah (Saudi Arabia)
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER)
- OSTI Identifier:
- 1256910
- Grant/Contract Number:
- AC02-05CH11231
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Standards in Genomic Sciences
- Additional Journal Information:
- Journal Volume: 10; Journal Issue: 1; Journal ID: ISSN 1944-3277
- Publisher:
- BioMed Central
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; Root-nodule bacteria; Nitrogen fixation; Symbiosis; Alphaproteobacteria; GEBA-RNB
Citation Formats
Tian, Rui, Parker, Matthew, Seshadri, Rekha, Reddy, T. B. K., Markowitz, Victor, Ivanova, Natalia, Pati, Amrita, Woyke, Tanja, Baeshen, Mohammed, Baeshen, Nabih, Kyrpides, Nikos, and Reeve, Wayne. High-quality permanent draft genome sequence of Bradyrhizobium sp. Ai1a-2; a microsymbiont of Andira inermis discovered in Costa Rica. United States: N. p., 2015.
Web. doi:10.1186/s40793-015-0007-z.
Tian, Rui, Parker, Matthew, Seshadri, Rekha, Reddy, T. B. K., Markowitz, Victor, Ivanova, Natalia, Pati, Amrita, Woyke, Tanja, Baeshen, Mohammed, Baeshen, Nabih, Kyrpides, Nikos, & Reeve, Wayne. High-quality permanent draft genome sequence of Bradyrhizobium sp. Ai1a-2; a microsymbiont of Andira inermis discovered in Costa Rica. United States. https://doi.org/10.1186/s40793-015-0007-z
Tian, Rui, Parker, Matthew, Seshadri, Rekha, Reddy, T. B. K., Markowitz, Victor, Ivanova, Natalia, Pati, Amrita, Woyke, Tanja, Baeshen, Mohammed, Baeshen, Nabih, Kyrpides, Nikos, and Reeve, Wayne. Sun .
"High-quality permanent draft genome sequence of Bradyrhizobium sp. Ai1a-2; a microsymbiont of Andira inermis discovered in Costa Rica". United States. https://doi.org/10.1186/s40793-015-0007-z. https://www.osti.gov/servlets/purl/1256910.
@article{osti_1256910,
title = {High-quality permanent draft genome sequence of Bradyrhizobium sp. Ai1a-2; a microsymbiont of Andira inermis discovered in Costa Rica},
author = {Tian, Rui and Parker, Matthew and Seshadri, Rekha and Reddy, T. B. K. and Markowitz, Victor and Ivanova, Natalia and Pati, Amrita and Woyke, Tanja and Baeshen, Mohammed and Baeshen, Nabih and Kyrpides, Nikos and Reeve, Wayne},
abstractNote = {Bradyrhizobium sp. Ai1a-2 is is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective nitrogen fixing root nodule of Andira inermis collected from Tres Piedras in Costa Rica. In this report we describe, for the first time, the genome sequence information and annotation of this legume microsymbiont. The 9,029,266 bp genome has a GC content of 62.56% with 247 contigs arranged into 246 scaffolds. The assembled genome contains 8,482 protein-coding genes and 102 RNA-only encoding genes. Lastly, this rhizobial genome was sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) project proposal.},
doi = {10.1186/s40793-015-0007-z},
journal = {Standards in Genomic Sciences},
number = 1,
volume = 10,
place = {United States},
year = {Sun Jun 14 00:00:00 EDT 2015},
month = {Sun Jun 14 00:00:00 EDT 2015}
}
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