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Title: Gateways to the FANTOM5 promoter level mammalian expression atlas

The FANTOM5 project investigates transcription initiation activities in more than 1,000 human and mouse primary cells, cell lines and tissues using CAGE. Based on manual curation of sample information and development of an ontology for sample classification, we assemble the resulting data into a centralized data resource (http://fantom.gsc.riken.jp/5/). In conclusion, this resource contains web-based tools and data-access points for the research community to search and extract data related to samples, genes, promoter activities, transcription factors and enhancers across the FANTOM5 atlas.
Authors:
 [1] ;  [1] ;  [1] ;  [1] ;  [2] ;  [1] ;  [2] ;  [3] ;  [1] ;  [1] ;  [4] ;  [1] ;  [5] ;  [6] ;  [7] ;  [1] ;  [8] ;  [9] ;  [5] ;  [7] more »;  [10] ;  [11] ;  [7] ;  [12] ;  [13] ;  [14] ;  [7] ;  [15] ;  [16] ;  [17] ;  [11] ;  [11] ;  [11] ;  [14] ;  [5] ;  [3] ;  [18] ;  [1] ;  [19] ;  [1] ;  [20] « less
  1. RIKEN Yokohama Institute, Kanagawa (Japan); RIKEN Center for Life Science Technologie, Kanagawa (Japan)
  2. RIKEN Center for Life Science Technologie, Kanagawa (Japan)
  3. RIKEN Yokohama Institute, Kanagawa (Japan)
  4. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
  5. Univ. of Edinburgh, Scotland (United Kingdom)
  6. RIKEN Yokohama Institute, Kanagawa (Japan); RIKEN Center for Life Science Technologie, Kanagawa (Japan); National Univ. of Singapore (Singapore)
  7. Research Organization of Information Systems, Chiba (Japan)
  8. Univ. at Buffalo School of Medicine and Biomedical Sciences, Buffalo, NY (United States)
  9. Harvard School of Public Health, Boston, MA (United States)
  10. Harvard School of Public Health, Boston, MA (United States); Univ. of Sheffield, Sheffield (United Kingdom)
  11. Leiden Univ. Medical Center, Leiden (Netherlands)
  12. RIKEN Yokohama Institute, Kanagawa (Japan); RIKEN Center for Life Science Technologie, Kanagawa (Japan); The Univ. of Western Australia, Western Australia (Australia)
  13. European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge (United Kingdom)
  14. RIKEN Advanced Center for Computing and Communication, Saitama (Japan)
  15. Univ. Hospital Regensburg, Regensburg (Germany)
  16. Copenhagen Univ., Copenhagen (Denmark)
  17. Leiden Univ. Medical Center, Leiden (Netherlands); Leiden Univ., Leiden (Netherlands)
  18. RIKEN Yokohama Institute, Kanagawa (Japan); RIKEN Center for Life Science Technologie, Kanagawa (Japan); RIKEN Preventive Medicine and Diagnosis Innovative Program, Saitama (Japan)
  19. RIKEN Yokohama Institute, Kanagawa (Japan); RIKEN Preventive Medicine and Diagnosis Innovative Program, Saitama (Japan)
  20. RIKEN Yokohama Institute, Kanagawa (Japan); RIKEN Center for Life Science Technologie, Kanagawa (Japan); RIKEN Preventive Medicine and Diagnosis Innovative Program, Saitama (Japan); RIKEN Advanced Center for Computing and Communication, Saitama (Japan)
Publication Date:
OSTI Identifier:
1256488
Grant/Contract Number:
AC02-05CH11231
Type:
Accepted Manuscript
Journal Name:
Genome Biology
Additional Journal Information:
Journal Volume: 16; Journal Issue: 1; Journal ID: ISSN 1465-6906
Publisher:
BioMed Central
Research Org:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Org:
USDOE Office of Science (SC), Basic Energy Sciences (BES) (SC-22)
Contributing Orgs:
The FANTOM consortium
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; 97 MATHEMATICS AND COMPUTING