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Title: Anharmonicity and confinement in zeolites: Structure, spectroscopy, and adsorption free energy of ethanol in H-ZSM-5

Abstract

Here, to account for thermal and entropic effects caused by the dynamics of the motion of the reaction intermediates, ethanol adsorption on the Brønsted acid site of the H-ZSM-5 catalyst has been studied at different temperatures and ethanol loadings using ab initio molecular dynamics (AIMD) simulations, infrared (IR) spectroscopy and calorimetric measurements. At low temperatures (T ≤ 400 K) and ethanol loading, a single ethanol molecule adsorbed in H-ZSM-5 forms a Zundel-like structure where the proton is equally shared between the oxygen of the zeolite and the oxygen of the alcohol. At higher ethanol loading, a second ethanol molecule helps to stabilize the protonated ethanol at all temperatures by acting as a solvating agent. The vibrational density of states (VDOS), as calculated from the AIMD simulations, are in excellent agreement with measured IR spectra for C2H5OH, C2H5OD and C2D5OH isotopomers and support the existence of both monomers and dimers. A quasi-harmonic approximation (QHA), applied to the VDOS obtained from the AIMD simulations, provides estimates of adsorption free energy within ~10 kJ/mol of the experimentally determined quantities, whereas the traditional approach, employing harmonic frequencies from a single ground state minimum, strongly overestimates the adsorption free energy by at least ~30 kJ/mol.more » This discrepancy is traced back to the inability of the harmonic approximation to represent the contributions to the vibrational motions of the ethanol molecule upon confinement in the zeolite. KA, MFR, GBM were supported by the Long Term Structural Methusalem Funding by the Flemish Government – grant number BOF09/01M00409. MSL, VAG, RR and JAL were supported by the US Department of Energy, Office of Science, Office of Basic Energy Sciences, Division of Chemical Sciences, Geosciences & Biosciences. PNNL is a multiprogram national laboratory operated for DOE by Battelle. Computational resources were provided at W. R. Wiley Environmental Molecular Science Laboratory (EMSL), a national scientific user facility sponsored by the Department of Energy’s Office of Biological and Environmental Research located at PNNL, the National Energy Research Scientific Computing Center (NERSC) at Lawrence Berkeley National Laboratory and the Stevin Supercomputer Infrastructure at Ghent University.« less

Authors:
 [1];  [2];  [3];  [3];  [3];  [1];  [1];  [2];  [2];  [2]
  1. Ghent Univ., Gent (Belgium)
  2. Pacific Northwest National Lab. (PNNL), Richland, WA (United States)
  3. TU Munchen, Garching (Germany)
Publication Date:
Research Org.:
Pacific Northwest National Lab. (PNNL), Richland, WA (United States). Environmental Molecular Sciences Lab. (EMSL)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER); USDOE Office of Science (SC), Basic Energy Sciences (BES)
OSTI Identifier:
1253826
Report Number(s):
PNNL-SA-116157
Journal ID: ISSN 1932-7447; 48772; KC0302010
Grant/Contract Number:  
AC05-76RL01830
Resource Type:
Accepted Manuscript
Journal Name:
Journal of Physical Chemistry. C
Additional Journal Information:
Journal Volume: 120; Journal Issue: 13; Journal ID: ISSN 1932-7447
Publisher:
American Chemical Society
Country of Publication:
United States
Language:
English
Subject:
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CHEMISTRY; Environmental Molecular Sciences Laboratory

Citation Formats

Alexopoulos, Konstantinos, Lee, Mal -Soon, Liu, Yue, Zhi, Yuchun, Liu, Yuanshuai, Reyniers, Marie -Francoise, Marin, Guy B., Glezakou, Vassiliki -Alexandra, Rousseau, Roger, and Lercher, Johannes A. Anharmonicity and confinement in zeolites: Structure, spectroscopy, and adsorption free energy of ethanol in H-ZSM-5. United States: N. p., 2016. Web. doi:10.1021/acs.jpcc.6b00923.
Alexopoulos, Konstantinos, Lee, Mal -Soon, Liu, Yue, Zhi, Yuchun, Liu, Yuanshuai, Reyniers, Marie -Francoise, Marin, Guy B., Glezakou, Vassiliki -Alexandra, Rousseau, Roger, & Lercher, Johannes A. Anharmonicity and confinement in zeolites: Structure, spectroscopy, and adsorption free energy of ethanol in H-ZSM-5. United States. https://doi.org/10.1021/acs.jpcc.6b00923
Alexopoulos, Konstantinos, Lee, Mal -Soon, Liu, Yue, Zhi, Yuchun, Liu, Yuanshuai, Reyniers, Marie -Francoise, Marin, Guy B., Glezakou, Vassiliki -Alexandra, Rousseau, Roger, and Lercher, Johannes A. Mon . "Anharmonicity and confinement in zeolites: Structure, spectroscopy, and adsorption free energy of ethanol in H-ZSM-5". United States. https://doi.org/10.1021/acs.jpcc.6b00923. https://www.osti.gov/servlets/purl/1253826.
@article{osti_1253826,
title = {Anharmonicity and confinement in zeolites: Structure, spectroscopy, and adsorption free energy of ethanol in H-ZSM-5},
author = {Alexopoulos, Konstantinos and Lee, Mal -Soon and Liu, Yue and Zhi, Yuchun and Liu, Yuanshuai and Reyniers, Marie -Francoise and Marin, Guy B. and Glezakou, Vassiliki -Alexandra and Rousseau, Roger and Lercher, Johannes A.},
abstractNote = {Here, to account for thermal and entropic effects caused by the dynamics of the motion of the reaction intermediates, ethanol adsorption on the Brønsted acid site of the H-ZSM-5 catalyst has been studied at different temperatures and ethanol loadings using ab initio molecular dynamics (AIMD) simulations, infrared (IR) spectroscopy and calorimetric measurements. At low temperatures (T ≤ 400 K) and ethanol loading, a single ethanol molecule adsorbed in H-ZSM-5 forms a Zundel-like structure where the proton is equally shared between the oxygen of the zeolite and the oxygen of the alcohol. At higher ethanol loading, a second ethanol molecule helps to stabilize the protonated ethanol at all temperatures by acting as a solvating agent. The vibrational density of states (VDOS), as calculated from the AIMD simulations, are in excellent agreement with measured IR spectra for C2H5OH, C2H5OD and C2D5OH isotopomers and support the existence of both monomers and dimers. A quasi-harmonic approximation (QHA), applied to the VDOS obtained from the AIMD simulations, provides estimates of adsorption free energy within ~10 kJ/mol of the experimentally determined quantities, whereas the traditional approach, employing harmonic frequencies from a single ground state minimum, strongly overestimates the adsorption free energy by at least ~30 kJ/mol. This discrepancy is traced back to the inability of the harmonic approximation to represent the contributions to the vibrational motions of the ethanol molecule upon confinement in the zeolite. KA, MFR, GBM were supported by the Long Term Structural Methusalem Funding by the Flemish Government – grant number BOF09/01M00409. MSL, VAG, RR and JAL were supported by the US Department of Energy, Office of Science, Office of Basic Energy Sciences, Division of Chemical Sciences, Geosciences & Biosciences. PNNL is a multiprogram national laboratory operated for DOE by Battelle. Computational resources were provided at W. R. Wiley Environmental Molecular Science Laboratory (EMSL), a national scientific user facility sponsored by the Department of Energy’s Office of Biological and Environmental Research located at PNNL, the National Energy Research Scientific Computing Center (NERSC) at Lawrence Berkeley National Laboratory and the Stevin Supercomputer Infrastructure at Ghent University.},
doi = {10.1021/acs.jpcc.6b00923},
journal = {Journal of Physical Chemistry. C},
number = 13,
volume = 120,
place = {United States},
year = {Mon Mar 21 00:00:00 EDT 2016},
month = {Mon Mar 21 00:00:00 EDT 2016}
}

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Works referenced in this record:

A Link between Reactivity and Local Structure in Acid Catalysis on Zeolites
journal, April 2008

  • Bhan, Aditya; Iglesia, Enrique
  • Accounts of Chemical Research, Vol. 41, Issue 4
  • DOI: 10.1021/ar700181t

State of the art and future challenges of zeolites as catalysts
journal, May 2003


Adsorption of C2−C8 n -Alkanes in Zeolites
journal, September 2010

  • De Moor, Bart A.; Reyniers, Marie-Françoise; Gobin, Oliver C.
  • The Journal of Physical Chemistry C, Vol. 115, Issue 4
  • DOI: 10.1021/jp106536m

On the Role of the Pore Size and Tortuosity for Sorption of Alkanes in Molecular Sieves
journal, February 1997

  • Eder, F.; Lercher, J. A.
  • The Journal of Physical Chemistry B, Vol. 101, Issue 8
  • DOI: 10.1021/jp961816i

The Roles of Entropy and Enthalpy in Stabilizing Ion-Pairs at Transition States in Zeolite Acid Catalysis
journal, August 2011

  • Gounder, Rajamani; Iglesia, Enrique
  • Accounts of Chemical Research, Vol. 45, Issue 2
  • DOI: 10.1021/ar200138n

The catalytic diversity of zeolites: confinement and solvation effects within voids of molecular dimensions
journal, January 2013

  • Gounder, Rajamani; Iglesia, Enrique
  • Chemical Communications, Vol. 49, Issue 34
  • DOI: 10.1039/c3cc40731d

Characterization of Acidic OH Groups in Zeolites of Different Types:  An Interpretation of NH 3 -TPD Results in the Light of Confinement Effects
journal, April 2002

  • Hunger, Bernd; Heuchel, Matthias; Clark, Louis A.
  • The Journal of Physical Chemistry B, Vol. 106, Issue 15
  • DOI: 10.1021/jp012688n

The confinement effect in zeolites
journal, June 2009


An Examination of Confinement Effects in High-Silica Zeolites
journal, February 2001

  • Yang, L.; Trafford, K.; Kresnawahjuesa, O.
  • The Journal of Physical Chemistry B, Vol. 105, Issue 10
  • DOI: 10.1021/jp002964i

Carbon-13 NMR identification of intermediates formed by 2-methyl-2-propanol adsorption in H-ZSM-5
journal, February 1989

  • Aronson, M. T.; Gorte, R. J.; Farneth, W. E.
  • Journal of the American Chemical Society, Vol. 111, Issue 3
  • DOI: 10.1021/ja00185a009

The role of spatial constraints and entropy in the adsorption and transformation of hydrocarbons catalyzed by zeolites
journal, September 2015


Adsorption and surface chemistry of light thiols on Na-ZSM5 and H-ZSM5
journal, December 1991

  • Garcia, Cristina L.; Lercher, Johannes A.
  • The Journal of Physical Chemistry, Vol. 95, Issue 26
  • DOI: 10.1021/j100179a040

Interaction of methanol with Broensted acid sites of zeolite catalysts: an ab initio study
journal, April 1995

  • Haase, Frank; Sauer, Joachim
  • Journal of the American Chemical Society, Vol. 117, Issue 13
  • DOI: 10.1021/ja00118a014

Theoretical study of the adsorption of C1–C4 primary alcohols in H-ZSM-5
journal, January 2010

  • Nguyen, Cuong M.; Reyniers, Marie-Françoise; Marin, Guy B.
  • Physical Chemistry Chemical Physics, Vol. 12, Issue 32
  • DOI: 10.1039/c000503g

Quantum Chemical Modeling of Zeolite-Catalyzed Methylation Reactions: Toward Chemical Accuracy for Barriers
journal, January 2009

  • Svelle, Stian; Tuma, Christian; Rozanska, Xavier
  • Journal of the American Chemical Society, Vol. 131, Issue 2
  • DOI: 10.1021/ja807695p

Dehydration of Ethanol into Ethylene over Solid Acid Catalysts
journal, December 2005


Efficient Approach for the Computational Study of Alcohol and Nitrile Adsorption in H-ZSM-5
journal, February 2012

  • Van der Mynsbrugge, Jeroen; Hemelsoet, Karen; Vandichel, Matthias
  • The Journal of Physical Chemistry C, Vol. 116, Issue 9
  • DOI: 10.1021/jp2123828

Effect of Anharmonicity on Adsorption Thermodynamics
journal, May 2014

  • Piccini, GiovanniMaria; Sauer, Joachim
  • Journal of Chemical Theory and Computation, Vol. 10, Issue 6
  • DOI: 10.1021/ct500291x

Role of the Zeolitic Environment in Catalytic Activation of Methanol
journal, March 1999

  • Štich, I.; Gale, J. D.; Terakura, K.
  • Journal of the American Chemical Society, Vol. 121, Issue 14
  • DOI: 10.1021/ja983470q

Accurate Adsorption Thermodynamics of Small Alkanes in Zeolites. Ab initio Theory and Experiment for H-Chabazite
journal, March 2015

  • Piccini, GiovanniMaria; Alessio, Maristella; Sauer, Joachim
  • The Journal of Physical Chemistry C, Vol. 119, Issue 11
  • DOI: 10.1021/acs.jpcc.5b01739

Adsorption complexes of methanol on zeolite ZSM-5
journal, January 1990

  • Mirth, Gabriele; Lercher, Johannes A.; Anderson, Michael W.
  • Journal of the Chemical Society, Faraday Transactions, Vol. 86, Issue 17
  • DOI: 10.1039/ft9908603039

IR Spectrum and Structure of Protonated Ethanol Dimer:  Implications for the Mobility of Excess Protons in Solution
journal, August 2004

  • Solcà, Nicola; Dopfer, Otto
  • Journal of the American Chemical Society, Vol. 126, Issue 31
  • DOI: 10.1021/ja047760k

Generalized Gradient Approximation Made Simple
journal, October 1996

  • Perdew, John P.; Burke, Kieron; Ernzerhof, Matthias
  • Physical Review Letters, Vol. 77, Issue 18, p. 3865-3868
  • DOI: 10.1103/PhysRevLett.77.3865

Quickstep: Fast and accurate density functional calculations using a mixed Gaussian and plane waves approach
journal, April 2005

  • VandeVondele, Joost; Krack, Matthias; Mohamed, Fawzi
  • Computer Physics Communications, Vol. 167, Issue 2
  • DOI: 10.1016/j.cpc.2004.12.014

Semiempirical GGA-type density functional constructed with a long-range dispersion correction
journal, January 2006

  • Grimme, Stefan
  • Journal of Computational Chemistry, Vol. 27, Issue 15, p. 1787-1799
  • DOI: 10.1002/jcc.20495

Separable dual-space Gaussian pseudopotentials
journal, July 1996


Pseudopotentials for H to Kr optimized for gradient-corrected exchange-correlation functionals
journal, May 2005


Gaussian basis sets for accurate calculations on molecular systems in gas and condensed phases
journal, September 2007

  • VandeVondele, Joost; Hutter, Jürg
  • The Journal of Chemical Physics, Vol. 127, Issue 11
  • DOI: 10.1063/1.2770708

A hybrid Gaussian and plane wave density functional scheme
journal, October 1997


Acidity Differences between Inorganic Solids Induced by Their Framework Structure. A Combined Quantum Mechanics/Molecular Mechanics ab Initio Study on Zeolites
journal, February 1998

  • Brändle, Martin; Sauer, Joachim
  • Journal of the American Chemical Society, Vol. 120, Issue 7
  • DOI: 10.1021/ja9729037

Structure of synthetic zeolite ZSM-5
journal, March 1978

  • Kokotailo, G. T.; Lawton, S. L.; Olson, D. H.
  • Nature, Vol. 272, Issue 5652
  • DOI: 10.1038/272437a0

Quantum corrections to classical time-correlation functions: Hydrogen bonding and anharmonic floppy modes
journal, September 2004

  • Ramı́rez, Rafael; López-Ciudad, Telesforo; Kumar P., Padma
  • The Journal of Chemical Physics, Vol. 121, Issue 9
  • DOI: 10.1063/1.1774986

Absolute and Relative Entropies from Computer Simulation with Applications to Ligand Binding
journal, April 2005

  • Carlsson, Jens; Åqvist, Johan
  • The Journal of Physical Chemistry B, Vol. 109, Issue 13
  • DOI: 10.1021/jp046022f

Structure, dynamics and vibrational spectrum of supercritical CO2/H2O mixtures from ab initio molecular dynamics as a function of water cluster formation
journal, January 2010

  • Glezakou, Vassiliki-Alexandra; Rousseau, Roger; Dang, Liem X.
  • Physical Chemistry Chemical Physics, Vol. 12, Issue 31
  • DOI: 10.1039/b923306g

Calorimetric Study of Alcohol and Nitrile Adsorption Complexes in H-ZSM-5
journal, May 1997

  • Lee, C. -C.; Gorte, R. J.; Farneth, W. E.
  • The Journal of Physical Chemistry B, Vol. 101, Issue 19
  • DOI: 10.1021/jp970711s

Microstructural Response of Variably Hydrated Ca-rich Montmorillonite to Supercritical CO 2
journal, June 2014

  • Lee, Mal-Soon; McGrail, B. Peter; Glezakou, Vassiliki-Alexandra
  • Environmental Science & Technology, Vol. 48, Issue 15
  • DOI: 10.1021/es5005889

Finite-Temperature Effects on the Stability and Infrared Spectra of HCl(H 2 O) 6 Clusters
journal, December 2007

  • Ndongmouo, U. F. T.; Lee, M. -S.; Rousseau, R.
  • The Journal of Physical Chemistry A, Vol. 111, Issue 49
  • DOI: 10.1021/jp0765603

Multidimensional quantum dynamics and infrared spectroscopy of hydrogen bonds
journal, August 2006


The Molecular Origin of the “Continuous” Infrared Absorption in Aqueous Solutions of Acids: A Computational Approach
journal, February 2006

  • Iftimie, Radu; Tuckerman, Mark E.
  • Angewandte Chemie International Edition, Vol. 45, Issue 7
  • DOI: 10.1002/anie.200502259

Proton Transfer 200 Years after von Grotthuss: Insights from Ab Initio Simulations
journal, September 2006


Sequential Proton Transfer Through Water Bridges in Acid-Base Reactions
journal, October 2005


Assigning Protonation Patterns in Water Networks in Bacteriorhodopsin Based on Computed IR Spectra
journal, September 2004

  • Rousseau, Roger; Kleinschmidt, Volker; Schmitt, Udo W.
  • Angewandte Chemie International Edition, Vol. 43, Issue 36
  • DOI: 10.1002/anie.200453857

Works referencing / citing this record:

Estimating vibrational and thermodynamic properties of adsorbates with uncertainty using data driven surrogates
journal, November 2019

  • Tian, Huijie; Rzepa, Christopher; Upadhyay, Ronak
  • AIChE Journal, Vol. 65, Issue 12
  • DOI: 10.1002/aic.16838

Theoretical Determination of Size Effects in Zeolite-Catalyzed Alcohol Dehydration
journal, August 2019

  • Kunz, Larissa Y.; Bu, Lintao; Knott, Brandon C.
  • Catalysts, Vol. 9, Issue 9
  • DOI: 10.3390/catal9090700

Design, modelling, and application of a low void-volume in situ diffuse reflectance spectroscopic reaction cell for transient catalytic studies
journal, January 2019

  • Patil, Bhagyesha S.; Srinivasan, Priya D.; Atchison, Ed
  • Reaction Chemistry & Engineering, Vol. 4, Issue 4
  • DOI: 10.1039/c8re00302e

Methanol, ethanol, propanol, and butanol adsorption on H-ZSM-5 zeolite: an ONIOM study
journal, January 2019

  • Costa, Rogério J.; Castro, Elton A. S.; Politi, José R. S.
  • Journal of Molecular Modeling, Vol. 25, Issue 2
  • DOI: 10.1007/s00894-018-3894-2

Energetic Effects of a Closed System Approach Including Explicit Proton and Electron Acceptors as Demonstrated by a Mononuclear Ruthenium Water Oxidation Catalyst
journal, August 2018

  • de Ruiter, Jessica M.; de Groot, Huub J. M.; Buda, Francesco
  • ChemCatChem, Vol. 10, Issue 20
  • DOI: 10.1002/cctc.201801093

Application of modulation excitation-phase sensitive detection-DRIFTS for in situ /operando characterization of heterogeneous catalysts
journal, January 2019

  • Srinivasan, Priya D.; Patil, Bhagyesha S.; Zhu, Hongda
  • Reaction Chemistry & Engineering, Vol. 4, Issue 5
  • DOI: 10.1039/c9re00011a

Ab initio study of methanol and ethanol adsorption on Brønsted sites in zeolite H-MFI
journal, January 2018

  • Piccini, GiovanniMaria; Alessio, Maristella; Sauer, Joachim
  • Physical Chemistry Chemical Physics, Vol. 20, Issue 30
  • DOI: 10.1039/c8cp03632b