Polymorphic SSR markers for Plasmopara obducens (Peronosporaceae), the newly emergent downy mildew pathogen of Impatiens (Balsaminaceae)
Abstract
Premise of the study: Simple sequence repeat (SSR) markers were developed for Plasmopara obducens , the causal agent of the newly emergent downy mildew disease of Impatiens walleriana . Methods and Results: A 202‐Mb draft genome assembly was generated from P. obducens using Illumina technology and mined to identify 13,483 SSR motifs. Primers were synthesized for 62 marker candidates, of which 37 generated reliable PCR products. Testing of the 37 markers using 96 P. obducens samples showed 96% of the markers were polymorphic, with 2−6 alleles observed. Observed and expected heterozygosity ranged from 0.000−0.892 and 0.023−0.746, respectively. Just 17 markers were sufficient to identify all multilocus genotypes. Conclusions: These are the first SSR markers available for this pathogen, and one of the first molecular resources. These markers will be useful in assessing variation in pathogen populations and determining the factors contributing to the emergence of destructive impatiens downy mildew disease.
- Authors:
- Publication Date:
- Research Org.:
- U.S. Department of Agriculture, Washington, DC (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC)
- OSTI Identifier:
- 1505238
- Alternate Identifier(s):
- OSTI ID: 1239816; OSTI ID: 1505239
- Grant/Contract Number:
- AC05-06OR23100
- Resource Type:
- Published Article
- Journal Name:
- Applications in Plant Science
- Additional Journal Information:
- Journal Name: Applications in Plant Science Journal Volume: 3 Journal Issue: 11; Journal ID: ISSN 2168-0450
- Publisher:
- Wiley Blackwell (John Wiley & Sons)
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES
Citation Formats
Salgado‐Salazar, Catalina, Rivera, Yazmín, Veltri, Daniel, and Crouch, Jo Anne. Polymorphic SSR markers for Plasmopara obducens (Peronosporaceae), the newly emergent downy mildew pathogen of Impatiens (Balsaminaceae). United States: N. p., 2015.
Web. doi:10.3732/apps.1500073.
Salgado‐Salazar, Catalina, Rivera, Yazmín, Veltri, Daniel, & Crouch, Jo Anne. Polymorphic SSR markers for Plasmopara obducens (Peronosporaceae), the newly emergent downy mildew pathogen of Impatiens (Balsaminaceae). United States. https://doi.org/10.3732/apps.1500073
Salgado‐Salazar, Catalina, Rivera, Yazmín, Veltri, Daniel, and Crouch, Jo Anne. Tue .
"Polymorphic SSR markers for Plasmopara obducens (Peronosporaceae), the newly emergent downy mildew pathogen of Impatiens (Balsaminaceae)". United States. https://doi.org/10.3732/apps.1500073.
@article{osti_1505238,
title = {Polymorphic SSR markers for Plasmopara obducens (Peronosporaceae), the newly emergent downy mildew pathogen of Impatiens (Balsaminaceae)},
author = {Salgado‐Salazar, Catalina and Rivera, Yazmín and Veltri, Daniel and Crouch, Jo Anne},
abstractNote = {Premise of the study: Simple sequence repeat (SSR) markers were developed for Plasmopara obducens , the causal agent of the newly emergent downy mildew disease of Impatiens walleriana . Methods and Results: A 202‐Mb draft genome assembly was generated from P. obducens using Illumina technology and mined to identify 13,483 SSR motifs. Primers were synthesized for 62 marker candidates, of which 37 generated reliable PCR products. Testing of the 37 markers using 96 P. obducens samples showed 96% of the markers were polymorphic, with 2−6 alleles observed. Observed and expected heterozygosity ranged from 0.000−0.892 and 0.023−0.746, respectively. Just 17 markers were sufficient to identify all multilocus genotypes. Conclusions: These are the first SSR markers available for this pathogen, and one of the first molecular resources. These markers will be useful in assessing variation in pathogen populations and determining the factors contributing to the emergence of destructive impatiens downy mildew disease.},
doi = {10.3732/apps.1500073},
journal = {Applications in Plant Science},
number = 11,
volume = 3,
place = {United States},
year = {Tue Nov 10 00:00:00 EST 2015},
month = {Tue Nov 10 00:00:00 EST 2015}
}
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https://doi.org/10.3732/apps.1500073
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