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Title: A roadmap for research on crassulacean acid metabolism (CAM) to enhance sustainable food and bioenergy production in a hotter, drier world

Abstract

Crassulacean acid metabolism (CAM) is a specialized mode of photosynthesis that features nocturnal CO2 uptake, facilitates increased water-use efficiency (WUE), and enables CAM plants to inhabit water-limited environments such as semi-arid deserts or seasonally dry forests. Human population growth and global climate change now present challenges for agricultural production systems to increase food, feed, forage, fiber, and fuel production. One approach to meet these challenges is to increase reliance on CAM crops, such as Agave and Opuntia, for biomass production on semi-arid, abandoned, marginal, or degraded agricultural lands. Major research efforts are now underway to assess the productivity of CAM crop species and to harness the WUE of CAM by engineering this pathway into existing food, feed, and bioenergy crops. An improved understanding of CAM has potential for high returns on research investment. To exploit the potential of CAM crops and CAM bioengineering, it will be necessary to elucidate the evolution, genomic features, and regulatory mechanisms of CAM. Field trials and predictive models will be required to assess the productivity of CAM crops, while new synthetic biology approaches need to be developed for CAM engineering. Infrastructure will be needed for CAM model systems, field trials, mutant collections, and data management.

Authors:
 [1];  [2];  [3];  [4];  [1];  [1];  [5];  [5];  [6];  [1];  [1];  [1];  [7];  [8];  [9];  [10];  [2];  [1];  [11];  [12] more »;  [1];  [1];  [1];  [13];  [2];  [2];  [2];  [2];  [2];  [2];  [2];  [2];  [14];  [1];  [15];  [1];  [1];  [13];  [16];  [16];  [17];  [6];  [7];  [7];  [7];  [7];  [7];  [7];  [18];  [19];  [20];  [21];  [22];  [23] « less
  1. Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
  2. Univ. of Nevada, Reno, NV (United States)
  3. Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Newcastle Univ., Tyne (United Kingdom)
  4. Brown Univ., Providence, RI (United States)
  5. Univ. of Cambridge, Cambridge (United Kingdom)
  6. Univ. of Oxford, Oxford (United Kingdom)
  7. Univ. of Liverpool, Liverpool (United Kingdom)
  8. Ohio Univ., Athens, OH (United States)
  9. Smithsonian Tropical Research Institute, Ancon, (Republic of Panama)
  10. Univ. of Illinois at Urbana-Champaign, Urbana, IL (United States); Fujian Agriculture and Forestry Univ., Fuzhou (China)
  11. Brigham Young Univ., Provo, UT (United States)
  12. Univ. of Tennessee, Knoxville, TN (United States)
  13. Chinese Academy of Forestry, Fuyang (China)
  14. Newcastle Univ., Tyne (United Kingdom)
  15. TC Bioengineering Technology, Geel (Belgium)
  16. Centro de Investigacion Cientifica de Yucatan, Merida (Mexico)
  17. Univ. of Sao Paulo, Sao Paulo (Brazil)
  18. Smithsonian Tropical Research Institute, Ancon (Republic of Panama)
  19. Univ. of Toronto, ON (Canada)
  20. Univ. Autonoma de Coahuila, Saltillo (Mexico)
  21. HudsonAlpha Institute for Biotechnology, Huntsville, AL (United States); US Dept. of Energy Joint Genome Institute, Walnut Creek, CA (United States)
  22. HudsonAlpha Institute for Biotechnology, Huntsville, AL (United States)
  23. James Cook Univ., Townsville, QLD (Australia)
Publication Date:
Research Org.:
Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States); Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Org.:
National Science Foundation (NSF); UK Biotechnology and Biological Sciences Research Council; USDOE Office of Science (SC), Biological and Environmental Research (BER)
OSTI Identifier:
1213325
Alternate Identifier(s):
OSTI ID: 1616041; OSTI ID: 1787146
Grant/Contract Number:  
AC05-00OR22725; SC0008834; DEB-1252901; BB/F009313/1; AC02-05CH11231; NAES 000377; 000380
Resource Type:
Accepted Manuscript
Journal Name:
New Phytologist
Additional Journal Information:
Journal Volume: 207; Journal Issue: 3; Journal ID: ISSN 0028-646X
Publisher:
Wiley
Country of Publication:
United States
Language:
English
Subject:
09 BIOMASS FUELS; 60 APPLIED LIFE SCIENCES

Citation Formats

Yang, Xiaohan, Cushman, John C., Borland, Anne M., Edwards, Erika, Wullschleger, Stan D., Tuskan, Gerald A., Owen, Nick, Griffiths, Howard, Smith, J. Andrew C., Cestari De Paoli, Henrique, Weston, David, Cottingham, Robert, Hartwell, James, Davis, Sarah C., Silvera, Katia, Ming, Ray, Schlauch, Karen, Abraham, Paul E., Stewart, J. Ryan, Guo, Hao -Bo, Nair, Sujithkumar S., Ranjan, Priya, Palla, Kaitlin J., Yin, Hengfu, Albion, Rebecca, Ha, Jungmin, Lim, Sung Don, Wone, Bernard W. M., Yim, Won Cheol, Garcia, Travis, Mayer, Jesse A., Petereit, Juli, Casey, Erin, Hettich, Robert L., Ceusters, John, Ranjan, Priya, Palla, Kaitlin J., Yin, Hengfu, Reyes-Garcia, Casandra, Andrade, Jose Luis, Freschi, Luciano, Beltran, Juan D., Dever, Louisa V., Boxall, Susanna F., Waller, Jade, Davies, Jack, Bupphada, Phaitun, Kadu, Nirja, Winter, Klaus, Sage, Rowan F., Aguilar, Cristobal N., Schmutz, Jeremy, Jenkins, Jerry, and Holtum, Joseph A.M. A roadmap for research on crassulacean acid metabolism (CAM) to enhance sustainable food and bioenergy production in a hotter, drier world. United States: N. p., 2015. Web. doi:10.1111/nph.13393.
Yang, Xiaohan, Cushman, John C., Borland, Anne M., Edwards, Erika, Wullschleger, Stan D., Tuskan, Gerald A., Owen, Nick, Griffiths, Howard, Smith, J. Andrew C., Cestari De Paoli, Henrique, Weston, David, Cottingham, Robert, Hartwell, James, Davis, Sarah C., Silvera, Katia, Ming, Ray, Schlauch, Karen, Abraham, Paul E., Stewart, J. Ryan, Guo, Hao -Bo, Nair, Sujithkumar S., Ranjan, Priya, Palla, Kaitlin J., Yin, Hengfu, Albion, Rebecca, Ha, Jungmin, Lim, Sung Don, Wone, Bernard W. M., Yim, Won Cheol, Garcia, Travis, Mayer, Jesse A., Petereit, Juli, Casey, Erin, Hettich, Robert L., Ceusters, John, Ranjan, Priya, Palla, Kaitlin J., Yin, Hengfu, Reyes-Garcia, Casandra, Andrade, Jose Luis, Freschi, Luciano, Beltran, Juan D., Dever, Louisa V., Boxall, Susanna F., Waller, Jade, Davies, Jack, Bupphada, Phaitun, Kadu, Nirja, Winter, Klaus, Sage, Rowan F., Aguilar, Cristobal N., Schmutz, Jeremy, Jenkins, Jerry, & Holtum, Joseph A.M. A roadmap for research on crassulacean acid metabolism (CAM) to enhance sustainable food and bioenergy production in a hotter, drier world. United States. https://doi.org/10.1111/nph.13393
Yang, Xiaohan, Cushman, John C., Borland, Anne M., Edwards, Erika, Wullschleger, Stan D., Tuskan, Gerald A., Owen, Nick, Griffiths, Howard, Smith, J. Andrew C., Cestari De Paoli, Henrique, Weston, David, Cottingham, Robert, Hartwell, James, Davis, Sarah C., Silvera, Katia, Ming, Ray, Schlauch, Karen, Abraham, Paul E., Stewart, J. Ryan, Guo, Hao -Bo, Nair, Sujithkumar S., Ranjan, Priya, Palla, Kaitlin J., Yin, Hengfu, Albion, Rebecca, Ha, Jungmin, Lim, Sung Don, Wone, Bernard W. M., Yim, Won Cheol, Garcia, Travis, Mayer, Jesse A., Petereit, Juli, Casey, Erin, Hettich, Robert L., Ceusters, John, Ranjan, Priya, Palla, Kaitlin J., Yin, Hengfu, Reyes-Garcia, Casandra, Andrade, Jose Luis, Freschi, Luciano, Beltran, Juan D., Dever, Louisa V., Boxall, Susanna F., Waller, Jade, Davies, Jack, Bupphada, Phaitun, Kadu, Nirja, Winter, Klaus, Sage, Rowan F., Aguilar, Cristobal N., Schmutz, Jeremy, Jenkins, Jerry, and Holtum, Joseph A.M. Tue . "A roadmap for research on crassulacean acid metabolism (CAM) to enhance sustainable food and bioenergy production in a hotter, drier world". United States. https://doi.org/10.1111/nph.13393. https://www.osti.gov/servlets/purl/1213325.
@article{osti_1213325,
title = {A roadmap for research on crassulacean acid metabolism (CAM) to enhance sustainable food and bioenergy production in a hotter, drier world},
author = {Yang, Xiaohan and Cushman, John C. and Borland, Anne M. and Edwards, Erika and Wullschleger, Stan D. and Tuskan, Gerald A. and Owen, Nick and Griffiths, Howard and Smith, J. Andrew C. and Cestari De Paoli, Henrique and Weston, David and Cottingham, Robert and Hartwell, James and Davis, Sarah C. and Silvera, Katia and Ming, Ray and Schlauch, Karen and Abraham, Paul E. and Stewart, J. Ryan and Guo, Hao -Bo and Nair, Sujithkumar S. and Ranjan, Priya and Palla, Kaitlin J. and Yin, Hengfu and Albion, Rebecca and Ha, Jungmin and Lim, Sung Don and Wone, Bernard W. M. and Yim, Won Cheol and Garcia, Travis and Mayer, Jesse A. and Petereit, Juli and Casey, Erin and Hettich, Robert L. and Ceusters, John and Ranjan, Priya and Palla, Kaitlin J. and Yin, Hengfu and Reyes-Garcia, Casandra and Andrade, Jose Luis and Freschi, Luciano and Beltran, Juan D. and Dever, Louisa V. and Boxall, Susanna F. and Waller, Jade and Davies, Jack and Bupphada, Phaitun and Kadu, Nirja and Winter, Klaus and Sage, Rowan F. and Aguilar, Cristobal N. and Schmutz, Jeremy and Jenkins, Jerry and Holtum, Joseph A.M.},
abstractNote = {Crassulacean acid metabolism (CAM) is a specialized mode of photosynthesis that features nocturnal CO2 uptake, facilitates increased water-use efficiency (WUE), and enables CAM plants to inhabit water-limited environments such as semi-arid deserts or seasonally dry forests. Human population growth and global climate change now present challenges for agricultural production systems to increase food, feed, forage, fiber, and fuel production. One approach to meet these challenges is to increase reliance on CAM crops, such as Agave and Opuntia, for biomass production on semi-arid, abandoned, marginal, or degraded agricultural lands. Major research efforts are now underway to assess the productivity of CAM crop species and to harness the WUE of CAM by engineering this pathway into existing food, feed, and bioenergy crops. An improved understanding of CAM has potential for high returns on research investment. To exploit the potential of CAM crops and CAM bioengineering, it will be necessary to elucidate the evolution, genomic features, and regulatory mechanisms of CAM. Field trials and predictive models will be required to assess the productivity of CAM crops, while new synthetic biology approaches need to be developed for CAM engineering. Infrastructure will be needed for CAM model systems, field trials, mutant collections, and data management.},
doi = {10.1111/nph.13393},
journal = {New Phytologist},
number = 3,
volume = 207,
place = {United States},
year = {Tue Jul 07 00:00:00 EDT 2015},
month = {Tue Jul 07 00:00:00 EDT 2015}
}

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Recent developments in Agave performance as a drought‐tolerant biofuel feedstock: agronomics, characterization, and biorefining
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Transposable Elements in the Pineapple Genome
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Computational analysis of the productivity potential of CAM
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Improved water use efficiency and shorter life cycle of Nicotiana tabacum due to modification of guard and vascular companion cells
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RNA-seq transcriptomic profiling of crassulacean acid metabolism pathway in Dendrobium catenatum
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Phylogenetic Relationships and Evolutionary Trends in the Cactus Family
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Comparative genomics can provide new insights into the evolutionary mechanisms and gene function in CAM plants
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Transcriptome Comparison Reveals Distinct Selection Patterns in Domesticated and Wild Agave Species, the Important CAM Plants
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Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave
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Simultaneous knockdown of six non-family genes using a single synthetic RNAi fragment in Arabidopsis thaliana
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Time of day and network reprogramming during drought induced CAM photosynthesis in Sedum album
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The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism
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Improved water use efficiency and shorter life cycle of Nicotiana tabacum due to modification of guard and vascular companion cells
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Transcriptome Comparison Reveals Distinct Selection Patterns in Domesticated and Wild Agave Species, the Important CAM Plants
journal, November 2018

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  • International Journal of Genomics, Vol. 2018
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Correction to: Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave
journal, April 2019


Transcriptome analysis of bolting in A. tequilana reveals roles for florigen, MADS, fructans and gibberellins
journal, June 2019


Simultaneous knockdown of six non-family genes using a single synthetic RNAi fragment in Arabidopsis thaliana
journal, February 2016


Engineering photosynthesis: progress and perspectives
journal, January 2017


Time of day and network reprogramming during drought induced CAM photosynthesis in Sedum album
journal, June 2019


Putting the Mess in Order: Aspergillus welwitschiae (and Not A. niger) Is the Etiological Agent of Sisal Bole Rot Disease in Brazil
journal, June 2018

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Agave as a model CAM crop system for a warming and drying world
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Performance Index and PSII Connectivity Under Drought and Contrasting Light Regimes in the CAM Orchid Phalaenopsis
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The Multiplanetary Future of Plant Synthetic Biology
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