Genetic Background Modulates lncRNA-Coordinated Tissue Response to Low Dose Ionizing Radiation
Abstract
Long noncoding RNAs (lncRNAs) are emerging as key regulators of diverse cell functions and processes. However, the relevance of lncRNAs in the cell and tissue response to ionizing radiation has not yet been characterized. Here we used microarray profiling to determine lncRNA and mRNA expression in mammary glands of BALB/c and SPRET/EiJ mice after low-dose ionizing radiation (LDIR) exposure. We found that unirradiated mammary tissues of these strains differed significantly in baseline expressions of 290 lncRNAs. LDIR exposure (10 cGy) induced a significant change in the expression of many lncRNAs. The vast majority of lncRNAs identified to be differentially expressed after LDIR in either BALB/c or SPRET/EiJ had a significantly correlated expression pattern with at least one LDIR responsive mRNA. Functional analysis revealed that the response to LDIR in BALB/c mice is highly dynamic with enrichment for genes involved in tissue injury, inflammatory responses, and mammary gland development at 2, 4, and 8 weeks after LDIR, respectively. Our study demonstrates that genetic background strongly influences the expression of lncRNAs and their response to radiation and that lncRNAs may coordinate the tissue response to LDIR exposure via regulation of coding mRNAs.
- Authors:
-
- Life Sciences Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road MS977, Berkeley, CA 94720, USA
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER)
- OSTI Identifier:
- 1227911
- Alternate Identifier(s):
- OSTI ID: 1209505; OSTI ID: 1512170
- Grant/Contract Number:
- AC02-05CH11231
- Resource Type:
- Published Article
- Journal Name:
- International Journal of Genomics
- Additional Journal Information:
- Journal Name: International Journal of Genomics Journal Volume: 2015; Journal ID: ISSN 2314-436X
- Publisher:
- Hindawi Publishing Corporation
- Country of Publication:
- Egypt
- Language:
- English
- Subject:
- 63 RADIATION, THERMAL, AND OTHER ENVIRON. POLLUTANT EFFECTS ON LIVING ORGS. AND BIOL. MAT.
Citation Formats
Tang, Jonathan, Huang, Yurong, Nguyen, David H., Costes, Sylvain V., Snijders, Antoine M., and Mao, Jian-Hua. Genetic Background Modulates lncRNA-Coordinated Tissue Response to Low Dose Ionizing Radiation. Egypt: N. p., 2015.
Web. doi:10.1155/2015/461038.
Tang, Jonathan, Huang, Yurong, Nguyen, David H., Costes, Sylvain V., Snijders, Antoine M., & Mao, Jian-Hua. Genetic Background Modulates lncRNA-Coordinated Tissue Response to Low Dose Ionizing Radiation. Egypt. https://doi.org/10.1155/2015/461038
Tang, Jonathan, Huang, Yurong, Nguyen, David H., Costes, Sylvain V., Snijders, Antoine M., and Mao, Jian-Hua. Thu .
"Genetic Background Modulates lncRNA-Coordinated Tissue Response to Low Dose Ionizing Radiation". Egypt. https://doi.org/10.1155/2015/461038.
@article{osti_1227911,
title = {Genetic Background Modulates lncRNA-Coordinated Tissue Response to Low Dose Ionizing Radiation},
author = {Tang, Jonathan and Huang, Yurong and Nguyen, David H. and Costes, Sylvain V. and Snijders, Antoine M. and Mao, Jian-Hua},
abstractNote = {Long noncoding RNAs (lncRNAs) are emerging as key regulators of diverse cell functions and processes. However, the relevance of lncRNAs in the cell and tissue response to ionizing radiation has not yet been characterized. Here we used microarray profiling to determine lncRNA and mRNA expression in mammary glands of BALB/c and SPRET/EiJ mice after low-dose ionizing radiation (LDIR) exposure. We found that unirradiated mammary tissues of these strains differed significantly in baseline expressions of 290 lncRNAs. LDIR exposure (10 cGy) induced a significant change in the expression of many lncRNAs. The vast majority of lncRNAs identified to be differentially expressed after LDIR in either BALB/c or SPRET/EiJ had a significantly correlated expression pattern with at least one LDIR responsive mRNA. Functional analysis revealed that the response to LDIR in BALB/c mice is highly dynamic with enrichment for genes involved in tissue injury, inflammatory responses, and mammary gland development at 2, 4, and 8 weeks after LDIR, respectively. Our study demonstrates that genetic background strongly influences the expression of lncRNAs and their response to radiation and that lncRNAs may coordinate the tissue response to LDIR exposure via regulation of coding mRNAs.},
doi = {10.1155/2015/461038},
journal = {International Journal of Genomics},
number = ,
volume = 2015,
place = {Egypt},
year = {Thu Jan 01 00:00:00 EST 2015},
month = {Thu Jan 01 00:00:00 EST 2015}
}
https://doi.org/10.1155/2015/461038
Web of Science
Figures / Tables:
Works referenced in this record:
Malignant Breast Tumors After Radiotherapy for a First Cancer During Childhood
journal, January 2005
- Guibout, Catherine; Adjadj, Elisabeth; Rubino, Carole
- Journal of Clinical Oncology, Vol. 23, Issue 1
Incidence of Female Breast Cancer among Atomic Bomb Survivors, 1950-1985
journal, May 1994
- Tokunaga, Masayoshi; Land, Charles E.; Tokuoka, Shoji
- Radiation Research, Vol. 138, Issue 2
Long non-coding RNAs: new players in cell differentiation and development
journal, December 2013
- Fatica, Alessandro; Bozzoni, Irene
- Nature Reviews Genetics, Vol. 15, Issue 1
Targeting long non-coding RNAs in cancers: Progress and prospects
journal, August 2013
- Li, Chi Han; Chen, Yangchao
- The International Journal of Biochemistry & Cell Biology, Vol. 45, Issue 8
Breast cancer risk among the survivors of atomic bomb and patients exposed to therapeutic ionising radiation
journal, June 2003
- Carmichael, A.; Sami, A. S.; Dixon, J. M.
- European Journal of Surgical Oncology (EJSO), Vol. 29, Issue 5
The Role of Long Noncoding RNAs in the Epigenetic Control of Gene Expression
journal, February 2014
- Morlando, Mariangela; Ballarino, Monica; Fatica, Alessandro
- ChemMedChem, Vol. 9, Issue 3
An interferon signature identified by RNA-sequencing of mammary tissues varies across the estrous cycle and is predictive of metastasis-free survival
journal, June 2014
- Snijders, Antoine M.; Langley, Sasha; Mao, Jian-Hua
- Oncotarget, Vol. 5, Issue 12
Systematic Review: Surveillance for Breast Cancer in Women Treated With Chest Radiation for Childhood, Adolescent, or Young Adult Cancer
journal, April 2010
- Henderson, Tara O.
- Annals of Internal Medicine, Vol. 152, Issue 7
Estimates of the cancer burden in Europe from radioactive fallout from the Chernobyl accident
journal, September 2006
- Cardis, Elisabeth; Krewski, Daniel; Boniol, Mathieu
- International Journal of Cancer, Vol. 119, Issue 6
Risk of cancer from diagnostic X-rays: estimates for the UK and 14 other countries
journal, January 2004
- de González, Amy Berrington; Darby, Sarah
- The Lancet, Vol. 363, Issue 9406
Rapid evolution of noncoding RNAs: lack of conservation does not mean lack of function
journal, January 2006
- Pang, Ken C.; Frith, Martin C.; Mattick, John S.
- Trends in Genetics, Vol. 22, Issue 1
Follow-up Studies of Breast Cancer Incidence among Atomic Bomb Survivors
journal, January 1991
- Tokunaga, Masayoshi; Land, Charles E.; Tokuoka, Shoji
- Journal of Radiation Research, Vol. 32, Issue SUPPLEMENT
Catalogues of mammalian long noncoding RNAs: modest conservation and incompleteness
journal, January 2009
- Marques, Ana C.; Ponting, Chris P.
- Genome Biology, Vol. 10, Issue 11
Radiation and breast cancer: a review of current evidence
journal, February 2004
- Ronckers, Cécile M.; Erdmann, Christine A.; Land, Charles E.
- Breast Cancer Research, Vol. 7, Issue 1
Long Noncoding RNAs-Related Diseases, Cancers, and Drugs
journal, January 2013
- Tang, Jen-Yang; Lee, Jin-Ching; Chang, Yung-Ting
- The Scientific World Journal, Vol. 2013
Chemokines: novel targets for breast cancer metastasis
journal, August 2007
- Ali, Simi; Lazennec, Gwendal
- Cancer and Metastasis Reviews, Vol. 26, Issue 3-4
Dose Response and Temporal Patterns of Radiation-Associated Solid Cancer Risks
journal, January 2003
- Preston, D. L.; Pierce, D. A.; Shimizu, Y.
- Health Physics, Vol. 85, Issue 1
Figures / Tables found in this record: