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Title: First-Principles Investigation of Nanopore Sequencing Using Variable Voltage Bias on Graphene-Based Nanoribbons

Authors:
 [1];  [2];  [3];  [4];  [5]
  1. Department of Biology, James Madison University, Harrisonburg, Virginia 22802, United States
  2. Theoretical Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
  3. Theoretical Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States, Center for Integrated Nanotechnologies, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
  4. Institute of Material Science, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States, Nordic Institute for Theoretical Physics, KTH Royal Institute of Technology and Stockholm University, Roslagstullsbacken 23, 106 91 Stockholm, Sweden
  5. Department of Physics and Astronomy, James Madison University, Harrisonburg, Virginia 22802, United States
Publication Date:
Sponsoring Org.:
USDOE Office of Science (SC), Basic Energy Sciences (BES)
OSTI Identifier:
1191345
Grant/Contract Number:  
DEAC52-06NA25396
Resource Type:
Published Article
Journal Name:
Journal of Physical Chemistry Letters
Additional Journal Information:
Journal Name: Journal of Physical Chemistry Letters Journal Volume: 6 Journal Issue: 13; Journal ID: ISSN 1948-7185
Publisher:
American Chemical Society
Country of Publication:
United States
Language:
English

Citation Formats

McFarland, Hannah L., Ahmed, Towfiq, Zhu, Jian-Xin, Balatsky, Alexander V., and Haraldsen, Jason T. First-Principles Investigation of Nanopore Sequencing Using Variable Voltage Bias on Graphene-Based Nanoribbons. United States: N. p., 2015. Web. doi:10.1021/acs.jpclett.5b01014.
McFarland, Hannah L., Ahmed, Towfiq, Zhu, Jian-Xin, Balatsky, Alexander V., & Haraldsen, Jason T. First-Principles Investigation of Nanopore Sequencing Using Variable Voltage Bias on Graphene-Based Nanoribbons. United States. https://doi.org/10.1021/acs.jpclett.5b01014
McFarland, Hannah L., Ahmed, Towfiq, Zhu, Jian-Xin, Balatsky, Alexander V., and Haraldsen, Jason T. Mon . "First-Principles Investigation of Nanopore Sequencing Using Variable Voltage Bias on Graphene-Based Nanoribbons". United States. https://doi.org/10.1021/acs.jpclett.5b01014.
@article{osti_1191345,
title = {First-Principles Investigation of Nanopore Sequencing Using Variable Voltage Bias on Graphene-Based Nanoribbons},
author = {McFarland, Hannah L. and Ahmed, Towfiq and Zhu, Jian-Xin and Balatsky, Alexander V. and Haraldsen, Jason T.},
abstractNote = {},
doi = {10.1021/acs.jpclett.5b01014},
journal = {Journal of Physical Chemistry Letters},
number = 13,
volume = 6,
place = {United States},
year = {Mon Jun 22 00:00:00 EDT 2015},
month = {Mon Jun 22 00:00:00 EDT 2015}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record
https://doi.org/10.1021/acs.jpclett.5b01014

Citation Metrics:
Cited by: 18 works
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Works referenced in this record:

Detection and Quantification of Methylation in DNA using Solid-State Nanopores
journal, March 2013

  • Shim, Jiwook; Humphreys, Gwendolyn I.; Venkatesan, Bala Murali
  • Scientific Reports, Vol. 3, Issue 1
  • DOI: 10.1038/srep01389

The Human Genome Project: Lessons from Large-Scale Biology
journal, April 2003


Assessing Graphene Nanopores for Sequencing DNA
journal, July 2012

  • Wells, David B.; Belkin, Maxim; Comer, Jeffrey
  • Nano Letters, Vol. 12, Issue 8
  • DOI: 10.1021/nl301655d

Discrimination of Methylcytosine from Hydroxymethylcytosine in DNA Molecules
journal, December 2010

  • Wanunu, Meni; Cohen-Karni, Devora; Johnson, Robert R.
  • Journal of the American Chemical Society, Vol. 133, Issue 3
  • DOI: 10.1021/ja107836t

Detection of Nucleic Acids with Graphene Nanopores: Ab Initio Characterization of a Novel Sequencing Device
journal, September 2010

  • Nelson, Tammie; Zhang, Bo; Prezhdo, Oleg V.
  • Nano Letters, Vol. 10, Issue 9, p. 3237-3242
  • DOI: 10.1021/nl9035934

Identifying single nucleotides by tunnelling current
journal, March 2010

  • Tsutsui, Makusu; Taniguchi, Masateru; Yokota, Kazumichi
  • Nature Nanotechnology, Vol. 5, Issue 4, p. 286-290
  • DOI: 10.1038/nnano.2010.42

A strategy of DNA sequencing employing computer programs
journal, January 1979


Immunity, Inflammation, and Cancer
journal, March 2010


Electronic Properties of DNA Base Molecules Adsorbed on a Metallic Surface
journal, October 2007

  • Kilina, Svetlana; Tretiak, Sergei; Yarotski, Dzmitry A.
  • The Journal of Physical Chemistry C, Vol. 111, Issue 39, p. 14541-14551
  • DOI: 10.1021/jp070805u

Electronic Fingerprints of DNA Bases on Graphene
journal, January 2012

  • Ahmed, Towfiq; Kilina, Svetlana; Das, Tanmoy
  • Nano Letters, Vol. 12, Issue 2, p. 927-931
  • DOI: 10.1021/nl2039315

Accurate Multiplex Polony Sequencing of an Evolved Bacterial Genome
journal, September 2005


Chemically Derived, Ultrasmooth Graphene Nanoribbon Semiconductors
journal, February 2008


Electronic Signatures of all Four DNA Nucleosides in a Tunneling Gap
journal, March 2010

  • Chang, Shuai; Huang, Shuo; He, Jin
  • Nano Letters, Vol. 10, Issue 3, p. 1070-1075
  • DOI: 10.1021/nl1001185

Correlation dynamics and enhanced signals for the identification of serial biomolecules and DNA bases
journal, February 2014


Sequence information can be obtained from single DNA molecules
journal, March 2003

  • Braslavsky, I.; Hebert, B.; Kartalov, E.
  • Proceedings of the National Academy of Sciences, Vol. 100, Issue 7
  • DOI: 10.1073/pnas.0230489100

Graphene as a subnanometre trans-electrode membrane
journal, August 2010

  • Garaj, S.; Hubbard, W.; Reina, A.
  • Nature, Vol. 467, Issue 7312, p. 190-193
  • DOI: 10.1038/nature09379

The fundamental role of epigenetic events in cancer
journal, June 2002

  • Jones, Peter A.; Baylin, Stephen B.
  • Nature Reviews Genetics, Vol. 3, Issue 6
  • DOI: 10.1038/nrg816

Single-Molecule Electrical Random Resequencing of DNA and RNA
journal, July 2012

  • Ohshiro, Takahito; Matsubara, Kazuki; Tsutsui, Makusu
  • Scientific Reports, Vol. 2, Article No. 501
  • DOI: 10.1038/srep00501

Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays
journal, June 2000

  • Brenner, Sydney; Johnson, Maria; Bridgham, John
  • Nature Biotechnology, Vol. 18, Issue 6
  • DOI: 10.1038/76469

DNA sequencing with chain-terminating inhibitors
journal, December 1977

  • Sanger, F.; Nicklen, S.; Coulson, A. R.
  • Proceedings of the National Academy of Sciences, Vol. 74, Issue 12
  • DOI: 10.1073/pnas.74.12.5463

Double-functionalized nanopore-embedded gold electrodes for rapid DNA sequencing
journal, January 2012

  • Pathak, Biswarup; Löfås, Henrik; Prasongkit, Jariyanee
  • Applied Physics Letters, Vol. 100, Issue 2
  • DOI: 10.1063/1.3673335

Atomic-scale imaging of DNA using scanning tunnelling microscopy
journal, July 1990

  • Driscoll, Robert J.; Youngquist, Michael G.; Baldeschwieler, John D.
  • Nature, Vol. 346, Issue 6281
  • DOI: 10.1038/346294a0

Next-Generation Epigenetic Detection Technique: Identifying Methylated Cytosine Using Graphene Nanopore
journal, July 2014

  • Ahmed, Towfiq; Haraldsen, Jason T.; Zhu, Jian-Xin
  • The Journal of Physical Chemistry Letters, Vol. 5, Issue 15
  • DOI: 10.1021/jz501085e

The rise of graphene
journal, March 2007

  • Geim, A. K.; Novoselov, K. S.
  • Nature Materials, Vol. 6, Issue 3, p. 183-191
  • DOI: 10.1038/nmat1849

The electronic properties of graphene
journal, January 2009

  • Castro Neto, A. H.; Guinea, F.; Peres, N. M. R.
  • Reviews of Modern Physics, Vol. 81, Issue 1, p. 109-162
  • DOI: 10.1103/RevModPhys.81.109

Density-functional method for nonequilibrium electron transport
journal, March 2002

  • Brandbyge, Mads; Mozos, José-Luis; Ordejón, Pablo
  • Physical Review B, Vol. 65, Issue 16, Article No. 165401
  • DOI: 10.1103/PhysRevB.65.165401

Direct measurement of electrical transport through DNA molecules
journal, February 2000

  • Porath, Danny; Bezryadin, Alexey; de Vries, Simon
  • Nature, Vol. 403, Issue 6770
  • DOI: 10.1038/35001029

Partial sequencing of a single DNA molecule with a scanning tunnelling microscope
journal, July 2009

  • Tanaka, Hiroyuki; Kawai, Tomoji
  • Nature Nanotechnology, Vol. 4, Issue 8, p. 518-522
  • DOI: 10.1038/nnano.2009.155

DNA methylation in cancer: too much, but also too little
journal, August 2002


A new method for sequencing DNA.
journal, February 1977

  • Maxam, A. M.; Gilbert, W.
  • Proceedings of the National Academy of Sciences, Vol. 74, Issue 2
  • DOI: 10.1073/pnas.74.2.560

Gene targeting approaches to complex genetic diseases: atherosclerosis and essential hypertension.
journal, June 1995

  • Smithies, O.; Maeda, N.
  • Proceedings of the National Academy of Sciences, Vol. 92, Issue 12
  • DOI: 10.1073/pnas.92.12.5266

Measurement of the Elastic Properties and Intrinsic Strength of Monolayer Graphene
journal, July 2008


Unveiling Stability Criteria of DNA-Carbon Nanotubes Constructs by Scanning Tunneling Microscopy and Computational Modeling
journal, January 2011

  • Kilina, Svetlana; Yarotski, Dzmitry A.; Talin, A. Alec
  • Journal of Drug Delivery, Vol. 2011, p. 1-9
  • DOI: 10.1155/2011/415621

Electronic structure of single DNA molecules resolved by transverse scanning tunnelling spectroscopy
journal, November 2007

  • Shapir, Errez; Cohen, Hezy; Calzolari, Arrigo
  • Nature Materials, Vol. 7, Issue 1
  • DOI: 10.1038/nmat2060

Complementary DNA sequencing: expressed sequence tags and human genome project
journal, June 1991