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Title: Characterization of one-dimensional molecular chains of 4,4'-biphenyl diisocyanide on Au(111) by scanning tunneling microscopy

Abstract

The morphology and electronic structure of vapor deposited 4,4'-biphenyldiisocyanide (BPDI) on a Au(111) surface were investigated using variable-temperature scanning tunneling microscopy (STM). When deposited at room temperature, BPDI molecules form one-dimensional molecular chains similar to that recently observed for the structurally related 1,4-phenyl diisocyanide (PDI). Compared to PDI, the longer periodicity for the BPDI molecular chains is consistent with the addition of a second phenyl ring and supports a structural model in which the BPDI molecules lie parallel to the surface and interconnected by Au-adatoms. The molecular chains are mostly aligned along the [110] direction of the Au(111) substrate, but exhibit frequent changes in angle that are consistent with directions between fcc and hcp three-fold hollow sites. Dispersion-corrected density functional theory calculations for one-dimensional chains of BPDI molecules bound end-to-end via their isocyanide groups to Au-adatoms reproduce the observed periodicity of the chains and show that this morphology is energetically favored over upright binding with one free –NC group. The spatially resolved conductance (dI/dV) map for BPDI on Au(111) exhibits a feature centered at -0.67 eV below the Fermi level which are delocalized along the chain with maxima at the Au-adatom and biphenyl positions. This occupied resonant feature is closemore » to that previously observed for the PDI in both photoemission and conductance measurements and is attributed to an occupied interfacial state resulting from BPDI-Au interactions« less

Authors:
 [1];  [2];  [3];  [3];  [4];  [5]
  1. Stony Brook Univ., NY (United States). Dept. of Chemistry
  2. Brookhaven National Lab. (BNL), Upton, NY (United States). Computational Science Center
  3. Brookhaven National Lab. (BNL), Upton, NY (United States). Center for Functional Nanomaterials
  4. Brookhaven National Lab. (BNL), Upton, NY (United States). Dept. of Chemistry
  5. Stony Brook Univ., NY (United States). Dept. of Chemistry; Brookhaven National Lab. (BNL), Upton, NY (United States)
Publication Date:
Research Org.:
Brookhaven National Lab. (BNL), Upton, NY (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Basic Energy Sciences (BES)
OSTI Identifier:
1182489
Alternate Identifier(s):
OSTI ID: 1228122
Report Number(s):
BNL-107350-2015-JA
Journal ID: ISSN 0021-9606; JCPSA6; R&D Project: CO-007; KC0301020; TRN: US1500505
Grant/Contract Number:  
SC00112704; AC02-98CH10086; AC02-98CH10886
Resource Type:
Accepted Manuscript
Journal Name:
Journal of Chemical Physics
Additional Journal Information:
Journal Volume: 142; Journal Issue: 10; Journal ID: ISSN 0021-9606
Publisher:
American Institute of Physics (AIP)
Country of Publication:
United States
Language:
English
Subject:
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CHEMISTRY; Scanning tunneling microscopy; Surface photoemission

Citation Formats

Zhou, Jing, Li, Yan, Zahl, Percy, Sutter, Peter, Stacchiola, Dario J., and White, Michael G. Characterization of one-dimensional molecular chains of 4,4'-biphenyl diisocyanide on Au(111) by scanning tunneling microscopy. United States: N. p., 2015. Web. doi:10.1063/1.4906046.
Zhou, Jing, Li, Yan, Zahl, Percy, Sutter, Peter, Stacchiola, Dario J., & White, Michael G. Characterization of one-dimensional molecular chains of 4,4'-biphenyl diisocyanide on Au(111) by scanning tunneling microscopy. United States. https://doi.org/10.1063/1.4906046
Zhou, Jing, Li, Yan, Zahl, Percy, Sutter, Peter, Stacchiola, Dario J., and White, Michael G. Sat . "Characterization of one-dimensional molecular chains of 4,4'-biphenyl diisocyanide on Au(111) by scanning tunneling microscopy". United States. https://doi.org/10.1063/1.4906046. https://www.osti.gov/servlets/purl/1182489.
@article{osti_1182489,
title = {Characterization of one-dimensional molecular chains of 4,4'-biphenyl diisocyanide on Au(111) by scanning tunneling microscopy},
author = {Zhou, Jing and Li, Yan and Zahl, Percy and Sutter, Peter and Stacchiola, Dario J. and White, Michael G.},
abstractNote = {The morphology and electronic structure of vapor deposited 4,4'-biphenyldiisocyanide (BPDI) on a Au(111) surface were investigated using variable-temperature scanning tunneling microscopy (STM). When deposited at room temperature, BPDI molecules form one-dimensional molecular chains similar to that recently observed for the structurally related 1,4-phenyl diisocyanide (PDI). Compared to PDI, the longer periodicity for the BPDI molecular chains is consistent with the addition of a second phenyl ring and supports a structural model in which the BPDI molecules lie parallel to the surface and interconnected by Au-adatoms. The molecular chains are mostly aligned along the [110] direction of the Au(111) substrate, but exhibit frequent changes in angle that are consistent with directions between fcc and hcp three-fold hollow sites. Dispersion-corrected density functional theory calculations for one-dimensional chains of BPDI molecules bound end-to-end via their isocyanide groups to Au-adatoms reproduce the observed periodicity of the chains and show that this morphology is energetically favored over upright binding with one free –NC group. The spatially resolved conductance (dI/dV) map for BPDI on Au(111) exhibits a feature centered at -0.67 eV below the Fermi level which are delocalized along the chain with maxima at the Au-adatom and biphenyl positions. This occupied resonant feature is close to that previously observed for the PDI in both photoemission and conductance measurements and is attributed to an occupied interfacial state resulting from BPDI-Au interactions},
doi = {10.1063/1.4906046},
journal = {Journal of Chemical Physics},
number = 10,
volume = 142,
place = {United States},
year = {Sat Mar 14 00:00:00 EDT 2015},
month = {Sat Mar 14 00:00:00 EDT 2015}
}

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Works referenced in this record:

Structure and growth of self-assembling monolayers
journal, November 2000


Self-Assembled Monolayers of Thiolates on Metals as a Form of Nanotechnology
journal, April 2005

  • Love, J. Christopher; Estroff, Lara A.; Kriebel, Jennah K.
  • Chemical Reviews, Vol. 105, Issue 4
  • DOI: 10.1021/cr0300789

Organic surfaces exposed by self-assembled organothiol monolayers: Preparation, characterization, and application
journal, July 2009


Electronic transport through metal–1,4-phenylene diisocyanide–metal junctions
journal, November 1999


Molecular Wires, Switches, and Memories
journal, April 2002


Molecular conductance spectroscopy of conjugated, phenyl-based molecules on Au(111): the effect of end groups on molecular conduction
journal, October 2000

  • Hong, S.; Reifenberger, R.; Tian, W.
  • Superlattices and Microstructures, Vol. 28, Issue 4
  • DOI: 10.1006/spmi.2000.0916

Adsorption of Diisocyanides on Gold
journal, July 2000

  • Henderson, Jason I.; Feng, Sue; Bein, Thomas
  • Langmuir, Vol. 16, Issue 15
  • DOI: 10.1021/la9906323

Enhanced Conduction through Isocyanide Terminal Groups in Alkane and Biphenylene Molecules Measured in Molecule/Nanoparticle/Molecule Junctions
journal, June 2007

  • Chu, Changwoong; Ayres, J. A.; Stefanescu, D. M.
  • The Journal of Physical Chemistry C, Vol. 111, Issue 22
  • DOI: 10.1021/jp065377r

A Theoretical Analysis of Metal−Molecule Contacts
journal, June 2001

  • Seminario, Jorge M.; De La Cruz, Cecilia E.; Derosa, Pedro A.
  • Journal of the American Chemical Society, Vol. 123, Issue 23
  • DOI: 10.1021/ja015661q

Electronic transport calculations for self-assembled monolayers of 1,4-phenylene diisocyanide on Au(111) contacts
journal, February 2004


Theoretical investigation of metal-molecule interface with terminal groups
journal, July 2005


Orientation and Bonding of 4,4‘-Biphenyldiisocyanide
journal, June 2004

  • Caruso, A. N.; Rajesh, R.; Gallup, G.
  • The Journal of Physical Chemistry B, Vol. 108, Issue 22
  • DOI: 10.1021/jp037710m

Correlation between HOMO Alignment and Contact Resistance in Molecular Junctions:  Aromatic Thiols versus Aromatic Isocyanides
journal, April 2006

  • Kim, ; Beebe, Jeremy M.; Jun, Yongseok
  • Journal of the American Chemical Society, Vol. 128, Issue 15
  • DOI: 10.1021/ja0607990

Microscopic Characterization of the Interface between Aromatic Isocyanides and Au(111):  A First-Principles Investigation
journal, April 2008

  • Li, Yan; Lu, Deyu; Swanson, Sally A.
  • The Journal of Physical Chemistry C, Vol. 112, Issue 16
  • DOI: 10.1021/jp7111044

Calculation of Quasi-Particle Energies of Aromatic Self-Assembled Monolayers on Au(111)
journal, January 2009

  • Li, Yan; Lu, Deyu; Galli, Giulia
  • Journal of Chemical Theory and Computation, Vol. 5, Issue 4
  • DOI: 10.1021/ct800465f

One-dimensional supramolecular surface structures: 1,4-diisocyanobenzene on Au(111) surfaces
journal, January 2010

  • Boscoboinik, Jorge A.; Calaza, Florencia C.; Habeeb, Zeesham
  • Physical Chemistry Chemical Physics, Vol. 12, Issue 37
  • DOI: 10.1039/c003239e

Creation of Low-Coordination Gold Sites on Au(111) Surface by 1,4-phenylene Diisocyanide Adsorption
journal, January 2011


Gold adatom as a key structural component in self-assembled monolayers of organosulfur molecules on Au(111)
journal, May 2010


Effects of Intrinsic Surface Defects on Thiophenol Self-Assembly on Au(111): Surface Structures and Reaction Mechanisms
journal, September 2012

  • Fan, Xiaoli; Zhang, Chao; Liu, Yan
  • The Journal of Physical Chemistry C, Vol. 116, Issue 37
  • DOI: 10.1021/jp306812v

Bonding Asymmetry and Adatoms in Low-Density Self-Assembled Monolayers of Dithiols on Au(111)
journal, October 2011

  • Sharif, Aisyah M.; Buckley, D. Noel; Buck, Manfred
  • The Journal of Physical Chemistry C, Vol. 115, Issue 44
  • DOI: 10.1021/jp206457g

Study of Alkylthiolate Self-assembled Monolayers on Au(111) Using a Semilocal meta-GGA Density Functional
journal, March 2012

  • Ferrighi, Lara; Pan, Yun-xiang; Grönbeck, Henrik
  • The Journal of Physical Chemistry C, Vol. 116, Issue 13
  • DOI: 10.1021/jp210869r

Effect of Coverage and Defects on the Adsorption of Propanethiol on Au(111) Surface: A Theoretical Study
journal, December 2011

  • Luque, Noelia B.; Santos, Elizabeth; Andres, Juan
  • Langmuir, Vol. 27, Issue 23
  • DOI: 10.1021/la202861s

Adsorption Structures and Electronic Properties of 1,4-Phenylene Diisocyanide on the Au(111) Surface
journal, October 2011

  • Zhou, J.; Acharya, D.; Camillone, N.
  • The Journal of Physical Chemistry C, Vol. 115, Issue 43
  • DOI: 10.1021/jp205349e

Self-Catalyzed Carbon Dioxide Adsorption by Metal–Organic Chains on Gold Surfaces
journal, July 2014


Determination of atom positions at stacking-fault dislocations on Au(111) by scanning tunneling microscopy
journal, April 1989


The flexible and modern open source scanning probe microscopy software package GXSM
journal, March 2003

  • Zahl, Percy; Bierkandt, Markus; Schröder, Stefan
  • Review of Scientific Instruments, Vol. 74, Issue 3
  • DOI: 10.1063/1.1540718

Open source scanning probe microscopy control software package GXSM
journal, May 2010

  • Zahl, Percy; Wagner, Thorsten; Möller, Rolf
  • Journal of Vacuum Science & Technology B, Nanotechnology and Microelectronics: Materials, Processing, Measurement, and Phenomena, Vol. 28, Issue 3
  • DOI: 10.1116/1.3374719

Semiempirical GGA-type density functional constructed with a long-range dispersion correction
journal, January 2006

  • Grimme, Stefan
  • Journal of Computational Chemistry, Vol. 27, Issue 15, p. 1787-1799
  • DOI: 10.1002/jcc.20495

Ab initio molecular-dynamics simulation of the liquid-metal–amorphous-semiconductor transition in germanium
journal, May 1994


QUANTUM ESPRESSO: a modular and open-source software project for quantum simulations of materials
journal, September 2009

  • Giannozzi, Paolo; Baroni, Stefano; Bonini, Nicola
  • Journal of Physics: Condensed Matter, Vol. 21, Issue 39, Article No. 395502
  • DOI: 10.1088/0953-8984/21/39/395502

Generalized Gradient Approximation Made Simple
journal, October 1996

  • Perdew, John P.; Burke, Kieron; Ernzerhof, Matthias
  • Physical Review Letters, Vol. 77, Issue 18, p. 3865-3868
  • DOI: 10.1103/PhysRevLett.77.3865

Chemical bonding of PTCDA on Ag surfaces and the formation of interface states
journal, March 2006


Impact of interface geometric structure on organic–metal interface energetics and subsequent films electronic structure
journal, August 2009

  • Yamane, H.; Kanai, K.; Ouchi, Y.
  • Journal of Electron Spectroscopy and Related Phenomena, Vol. 174, Issue 1-3
  • DOI: 10.1016/j.elspec.2009.03.002

The nature of the observed free-electron-like state in a PTCDA monolayer on Ag(111)
journal, June 2010


Rare Gases on Noble-Metal Surfaces:  An Angle-Resolved Photoemission Study with High Energy Resolution
journal, September 2004

  • Forster, F.; Hüfner, S.; Reinert, F.
  • The Journal of Physical Chemistry B, Vol. 108, Issue 38
  • DOI: 10.1021/jp049215b

Free-electron-like dispersion in an organic monolayer film on a metal substrate
journal, November 2006


Electronic structure and electron dynamics at an organic molecule/metal interface: interface states of tetra- tert -butyl-imine/Au(111)
journal, December 2010


Energy shift and wave function overlap of metal-organic interface states
journal, August 2011


Works referencing / citing this record:

On‐Surface Assembly of Au‐Dicyanoanthracene Coordination Structures on Au(111)
journal, May 2019

  • Yan, Linghao; Pohjavirta, Ilona; Alldritt, Benjamin
  • ChemPhysChem, Vol. 20, Issue 18
  • DOI: 10.1002/cphc.201900255