The kinase LYK5 is a major chitin receptor in Arabidopsis and forms a chitin-induced complex with related kinase CERK1
Abstract
Chitin is a fungal microbe-associated molecular pattern (MAMP) that is recognized in Arabidopsis by a lysin motif receptor kinase (LYK), AtCERK1. Previous research suggested that AtCERK1 is the major chitin receptor in plants and mediates chitin-induced signaling through homodimerization and phosphorylation. However, the reported chitin binding affinity of AtCERK1 is quite low, suggesting another receptor with high chitin binding affinity might be present. Here, we propose that AtLYK5 is the primary chitin receptor in Arabidopsis. Mutations in AtLYK5 resulted in a significant reduction in the plant chitin response. However, AtLYK5 shares overlapping function with AtLYK4 and, therefore, only AtLYK4/AtLYK5-2 double mutants show a complete loss of chitin response. AtLYK5 interacts with AtCERK1 in a chitin-dependent manner. Chitin binding to AtLYK5 is indispensable for chitin-induced AtCERK1 phosphorylation. AtLYK5 binds chitin at a much higher affinity than AtCERK1. Furthermore, the data suggest that AtLYK5 is the primary plant receptor for chitin, forming a chitin inducible complex with AtCERK1 to induce plant innate immunity.
- Authors:
-
- Division of Plant Sciences, National Center for Soybean Biotechnology, University of Missouri, Columbia, United States, Department of Biochemistry, University of Missouri, Columbia, United States
- Midwest Center for Structural Genomics, Argonne National Laboratory, Argonne, United States
- Publication Date:
- Research Org.:
- Argonne National Laboratory (ANL), Argonne, IL (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Basic Energy Sciences (BES); USDOE Office of Science (SC), Biological and Environmental Research (BER)
- OSTI Identifier:
- 1181086
- Alternate Identifier(s):
- OSTI ID: 1227909; OSTI ID: 1240691
- Grant/Contract Number:
- FG02-08ER15309; FG02-02ER15309; AC02-06CH11357
- Resource Type:
- Published Article
- Journal Name:
- eLife
- Additional Journal Information:
- Journal Name: eLife Journal Volume: 3; Journal ID: ISSN 2050-084X
- Publisher:
- eLife Sciences Publications, Ltd.
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 60 APPLIED LIFE SCIENCES
Citation Formats
Cao, Yangrong, Liang, Yan, Tanaka, Kiwamu, Nguyen, Cuong T., Jedrzejczak, Robert P., Joachimiak, Andrzej, and Stacey, Gary. The kinase LYK5 is a major chitin receptor in Arabidopsis and forms a chitin-induced complex with related kinase CERK1. United States: N. p., 2014.
Web. doi:10.7554/eLife.03766.
Cao, Yangrong, Liang, Yan, Tanaka, Kiwamu, Nguyen, Cuong T., Jedrzejczak, Robert P., Joachimiak, Andrzej, & Stacey, Gary. The kinase LYK5 is a major chitin receptor in Arabidopsis and forms a chitin-induced complex with related kinase CERK1. United States. https://doi.org/10.7554/eLife.03766
Cao, Yangrong, Liang, Yan, Tanaka, Kiwamu, Nguyen, Cuong T., Jedrzejczak, Robert P., Joachimiak, Andrzej, and Stacey, Gary. Thu .
"The kinase LYK5 is a major chitin receptor in Arabidopsis and forms a chitin-induced complex with related kinase CERK1". United States. https://doi.org/10.7554/eLife.03766.
@article{osti_1181086,
title = {The kinase LYK5 is a major chitin receptor in Arabidopsis and forms a chitin-induced complex with related kinase CERK1},
author = {Cao, Yangrong and Liang, Yan and Tanaka, Kiwamu and Nguyen, Cuong T. and Jedrzejczak, Robert P. and Joachimiak, Andrzej and Stacey, Gary},
abstractNote = {Chitin is a fungal microbe-associated molecular pattern (MAMP) that is recognized in Arabidopsis by a lysin motif receptor kinase (LYK), AtCERK1. Previous research suggested that AtCERK1 is the major chitin receptor in plants and mediates chitin-induced signaling through homodimerization and phosphorylation. However, the reported chitin binding affinity of AtCERK1 is quite low, suggesting another receptor with high chitin binding affinity might be present. Here, we propose that AtLYK5 is the primary chitin receptor in Arabidopsis. Mutations in AtLYK5 resulted in a significant reduction in the plant chitin response. However, AtLYK5 shares overlapping function with AtLYK4 and, therefore, only AtLYK4/AtLYK5-2 double mutants show a complete loss of chitin response. AtLYK5 interacts with AtCERK1 in a chitin-dependent manner. Chitin binding to AtLYK5 is indispensable for chitin-induced AtCERK1 phosphorylation. AtLYK5 binds chitin at a much higher affinity than AtCERK1. Furthermore, the data suggest that AtLYK5 is the primary plant receptor for chitin, forming a chitin inducible complex with AtCERK1 to induce plant innate immunity.},
doi = {10.7554/eLife.03766},
journal = {eLife},
number = ,
volume = 3,
place = {United States},
year = {Thu Oct 23 00:00:00 EDT 2014},
month = {Thu Oct 23 00:00:00 EDT 2014}
}
https://doi.org/10.7554/eLife.03766
Web of Science
Works referenced in this record:
Flagellin perception: a paradigm for innate immunity
journal, June 2002
- Gómez-Gómez, Lourdes; Boller, Thomas
- Trends in Plant Science, Vol. 7, Issue 6
A receptor-like cytoplasmic kinase, BIK1, associates with a flagellin receptor complex to initiate plant innate immunity
journal, December 2009
- Lu, D.; Wu, S.; Gao, X.
- Proceedings of the National Academy of Sciences, Vol. 107, Issue 1
Plant recognition of symbiotic bacteria requires two LysM receptor-like kinases
journal, October 2003
- Radutoiu, Simona; Madsen, Lene Heegaard; Madsen, Esben Bjørn
- Nature, Vol. 425, Issue 6958
AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility
journal, December 2009
- Morris, Garrett M.; Huey, Ruth; Lindstrom, William
- Journal of Computational Chemistry, Vol. 30, Issue 16
AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading
journal, January 2009
- Trott, Oleg; Olson, Arthur J.
- Journal of Computational Chemistry
Structural basis for chitin recognition by defense proteins: GlcNAc residues are bound in a multivalent fashion by extended binding sites in hevein domains
journal, July 2000
- Asensio, Juan L.; Cañada, Francisco J.; Siebert, Hans-Christian
- Chemistry & Biology, Vol. 7, Issue 7
Arabidopsis lysin-motif proteins LYM1 LYM3 CERK1 mediate bacterial peptidoglycan sensing and immunity to bacterial infection
journal, November 2011
- Willmann, R.; Lajunen, H. M.; Erbs, G.
- Proceedings of the National Academy of Sciences, Vol. 108, Issue 49
Legume receptors perceive the rhizobial lipochitin oligosaccharide signal molecules by direct binding
journal, August 2012
- Broghammer, A.; Krusell, L.; Blaise, M.
- Proceedings of the National Academy of Sciences, Vol. 109, Issue 34
Characterization of Early, Chitin-Induced Gene Expression in Arabidopsis
journal, September 2002
- Zhang, Bing; Ramonell, Katrina; Somerville, Shauna
- Molecular Plant-Microbe Interactions, Vol. 15, Issue 9
Immune receptor complexes at the plant cell surface
journal, August 2014
- Böhm, Hannah; Albert, Isabell; Fan, Li
- Current Opinion in Plant Biology, Vol. 20
Elicitors, Effectors, and R Genes: The New Paradigm and a Lifetime Supply of Questions
journal, September 2007
- Bent, Andrew F.; Mackey, David
- Annual Review of Phytopathology, Vol. 45, Issue 1
Nonlegumes Respond to Rhizobial Nod Factors by Suppressing the Innate Immune Response
journal, September 2013
- Liang, Y.; Cao, Y.; Tanaka, K.
- Science, Vol. 341, Issue 6152
The Lysin Motif Receptor-like Kinase (LysM-RLK) CERK1 Is a Major Chitin-binding Protein in Arabidopsis thaliana and Subject to Chitin-induced Phosphorylation
journal, July 2010
- Petutschnig, Elena K.; Jones, Alexandra M. E.; Serazetdinova, Liliya
- Journal of Biological Chemistry, Vol. 285, Issue 37
A Two-Hybrid-Receptor Assay Demonstrates Heteromer Formation as Switch-On for Plant Immune Receptors
journal, October 2013
- Albert, M.; Jehle, A. K.; Furst, U.
- PLANT PHYSIOLOGY, Vol. 163, Issue 4
Probing the Arabidopsis Flagellin Receptor: FLS2-FLS2 Association and the Contributions of Specific Domains to Signaling Function
journal, March 2012
- Sun, Wenxian; Cao, Yangrong; Jansen Labby, Kristin
- The Plant Cell, Vol. 24, Issue 3
Plant cells recognize chitin fragments for defense signaling through a plasma membrane receptor
journal, July 2006
- Kaku, H.; Nishizawa, Y.; Ishii-Minami, N.
- Proceedings of the National Academy of Sciences, Vol. 103, Issue 29
PROCHECK: a program to check the stereochemical quality of protein structures
journal, April 1993
- Laskowski, R. A.; MacArthur, M. W.; Moss, D. S.
- Journal of Applied Crystallography, Vol. 26, Issue 2
A Renaissance of Elicitors: Perception of Microbe-Associated Molecular Patterns and Danger Signals by Pattern-Recognition Receptors
journal, June 2009
- Boller, Thomas; Felix, Georg
- Annual Review of Plant Biology, Vol. 60, Issue 1
A flagellin-induced complex of the receptor FLS2 and BAK1 initiates plant defence
journal, July 2007
- Chinchilla, Delphine; Zipfel, Cyril; Robatzek, Silke
- Nature, Vol. 448, Issue 7152
LIGPLOT: a program to generate schematic diagrams of protein-ligand interactions
journal, January 1995
- Wallace, Andrew C.; Laskowski, Roman A.; Thornton, Janet M.
- "Protein Engineering, Design and Selection", Vol. 8, Issue 2
A Putative Leucine-Rich Repeat Receptor Kinase Involved in Brassinosteroid Signal Transduction
journal, September 1997
- Li, Jianming; Chory, Joanne
- Cell, Vol. 90, Issue 5
CERK1, a LysM receptor kinase, is essential for chitin elicitor signaling in Arabidopsis
journal, November 2007
- Miya, A.; Albert, P.; Shinya, T.
- Proceedings of the National Academy of Sciences, Vol. 104, Issue 49
Characterization of the wheat germ agglutinin binding to self-assembled monolayers of neoglycoconjugates by AFM and SPR
journal, February 2009
- Lienemann, Michael; Paananen, Arja; Boer, Harry
- Glycobiology, Vol. 19, Issue 6
Structure reveals that BAK1 as a co-receptor recognizes the BRI1-bound brassinolide
journal, October 2013
- Sun, Yadong; Han, Zhifu; Tang, Jiao
- Cell Research, Vol. 23, Issue 11
Lipochitooligosaccharide recognition: an ancient story
journal, June 2014
- Liang, Yan; Tóth, Katalin; Cao, Yangrong
- New Phytologist, Vol. 204, Issue 2
The Arabidopsis Leucine-Rich Repeat Receptor–Like Kinases BAK1/SERK3 and BKK1/SERK4 Are Required for Innate Immunity to Hemibiotrophic and Biotrophic Pathogens
journal, June 2011
- Roux, Milena; Schwessinger, Benjamin; Albrecht, Catherine
- The Plant Cell, Vol. 23, Issue 6
A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules
journal, May 1995
- Cornell, Wendy D.; Cieplak, Piotr; Bayly, Christopher I.
- Journal of the American Chemical Society, Vol. 117, Issue 19
A LysM Receptor-Like Kinase Plays a Critical Role in Chitin Signaling and Fungal Resistance in Arabidopsis
journal, February 2008
- Wan, Jinrong; Zhang, Xue-Cheng; Neece, David
- The Plant Cell, Vol. 20, Issue 2
UCSF Chimera?A visualization system for exploratory research and analysis
journal, January 2004
- Pettersen, Eric F.; Goddard, Thomas D.; Huang, Conrad C.
- Journal of Computational Chemistry, Vol. 25, Issue 13
Fungal effector Ecp6 outcompetes host immune receptor for chitin binding through intrachain LysM dimerization
journal, July 2013
- Sánchez-Vallet, Andrea; Saleem-Batcha, Raspudin; Kombrink, Anja
- eLife, Vol. 2
The plant immune system
journal, November 2006
- Jones, Jonathan D. G.; Dangl, Jeffery L.
- Nature, Vol. 444, Issue 7117
Autophosphorylation is essential for the in vivo function of the Lotus japonicus Nod factor receptor 1 and receptor-mediated signalling in cooperation with Nod factor receptor 5: NFR1 and NFR5 phosphorylation and signalling
journal, December 2010
- Madsen, Esben B.; Antolín-Llovera, Meritxell; Grossmann, Christina
- The Plant Journal, Vol. 65, Issue 3
Identification of a Plant Receptor for Extracellular ATP
journal, January 2014
- Choi, J.; Tanaka, K.; Cao, Y.
- Science, Vol. 343, Issue 6168
Chitin-induced activation of immune signaling by the rice receptor CEBiP relies on a unique sandwich-type dimerization
journal, January 2014
- Hayafune, M.; Berisio, R.; Marchetti, R.
- Proceedings of the National Academy of Sciences, Vol. 111, Issue 3
Lysin Motif–Containing Proteins LYP4 and LYP6 Play Dual Roles in Peptidoglycan and Chitin Perception in Rice Innate Immunity
journal, August 2012
- Liu, Bing; Li, Jian-Feng; Ao, Ying
- The Plant Cell, Vol. 24, Issue 8
Direct Binding of a Plant LysM Receptor-like Kinase, LysM RLK1/CERK1, to Chitin in Vitro
journal, December 2009
- Iizasa, Ei'ichi; Mitsutomi, Masaru; Nagano, Yukio
- Journal of Biological Chemistry, Vol. 285, Issue 5
Arabidopsis mesophyll protoplasts: a versatile cell system for transient gene expression analysis
journal, June 2007
- Yoo, Sang-Dong; Cho, Young-Hee; Sheen, Jen
- Nature Protocols, Vol. 2, Issue 7
Small RNAs: A New Paradigm in Plant-Microbe Interactions
journal, August 2014
- Weiberg, Arne; Wang, Ming; Bellinger, Marschal
- Annual Review of Phytopathology, Vol. 52, Issue 1
LYM2-dependent chitin perception limits molecular flux via plasmodesmata
journal, May 2013
- Faulkner, C.; Petutschnig, E.; Benitez-Alfonso, Y.
- Proceedings of the National Academy of Sciences, Vol. 110, Issue 22
The FLS2-Associated Kinase BIK1 Directly Phosphorylates the NADPH Oxidase RbohD to Control Plant Immunity
journal, March 2014
- Li, Lei; Li, Meng; Yu, Liping
- Cell Host & Microbe, Vol. 15, Issue 3
The receptor-like kinase SERK3/BAK1 is a central regulator of innate immunity in plants
journal, July 2007
- Heese, A.; Hann, D. R.; Gimenez-Ibanez, S.
- Proceedings of the National Academy of Sciences, Vol. 104, Issue 29
Perception of the Bacterial PAMP EF-Tu by the Receptor EFR Restricts Agrobacterium-Mediated Transformation
journal, May 2006
- Zipfel, Cyril; Kunze, Gernot; Chinchilla, Delphine
- Cell, Vol. 125, Issue 4
Activation of signaling receptors: do ligands bind to receptor monomer, dimer, or both?
journal, June 2013
- Pang, Xiaodong; Zhou, Huan-Xiang
- BMC Biophysics, Vol. 6, Issue 1
Comparative Protein Structure Modeling of Genes and Genomes
journal, June 2000
- Martí-Renom, Marc A.; Stuart, Ashley C.; Fiser, András
- Annual Review of Biophysics and Biomolecular Structure, Vol. 29, Issue 1
Receptor-like Cytoplasmic Kinases Integrate Signaling from Multiple Plant Immune Receptors and Are Targeted by a Pseudomonas syringae Effector
journal, April 2010
- Zhang, Jie; Li, Wei; Xiang, Tingting
- Cell Host & Microbe, Vol. 7, Issue 4
Fungal Small RNAs Suppress Plant Immunity by Hijacking Host RNA Interference Pathways
journal, October 2013
- Weiberg, Arne; Wang, Ming; Lin, Feng-Mao
- Science, Vol. 342, Issue 6154
Plant LysM proteins: modules mediating symbiosis and immunity
journal, August 2012
- Gust, Andrea A.; Willmann, Roland; Desaki, Yoshitake
- Trends in Plant Science, Vol. 17, Issue 8
Receptor signaling: Dimerization and beyond
journal, July 1996
- Stock, Jeff
- Current Biology, Vol. 6, Issue 7
Two LysM receptor molecules, CEBiP and OsCERK1, cooperatively regulate chitin elicitor signaling in rice: LysM receptors for rice chitin signaling
journal, September 2010
- Shimizu, Takeo; Nakano, Takuto; Takamizawa, Daisuke
- The Plant Journal, Vol. 64, Issue 2
The protein kinase family: conserved features and deduced phylogeny of the catalytic domains
journal, July 1988
- Hanks, S.; Quinn, A.; Hunter, T.
- Science, Vol. 241, Issue 4861
Functional Characterization of CEBiP and CERK1 Homologs in Arabidopsis and Rice Reveals the Presence of Different Chitin Receptor Systems in Plants
journal, August 2012
- Shinya, Tomonori; Motoyama, Noriko; Ikeda, Asahi
- Plant and Cell Physiology, Vol. 53, Issue 10
Plant PRRs and the Activation of Innate Immune Signaling
journal, April 2014
- Macho, Alberto P.; Zipfel, Cyril
- Molecular Cell, Vol. 54, Issue 2
Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana
journal, December 1998
- Clough, Steven J.; Bent, Andrew F.
- The Plant Journal, Vol. 16, Issue 6, p. 735-743
Autoregulation and Homodimerization Are Involved in the Activation of the Plant Steroid Receptor BRI1
journal, June 2005
- Wang, Xuelu; Li, Xiaoqing; Meisenhelder, Jill
- Developmental Cell, Vol. 8, Issue 6
Chitin-Induced Dimerization Activates a Plant Immune Receptor
journal, May 2012
- Liu, T.; Liu, Z.; Song, C.
- Science, Vol. 336, Issue 6085
Development of series of gateway binary vectors, pGWBs, for realizing efficient construction of fusion genes for plant transformation
journal, July 2007
- Nakagawa, Tsuyoshi; Kurose, Takayuki; Hino, Takeshi
- Journal of Bioscience and Bioengineering, Vol. 104, Issue 1
Direct Regulation of the NADPH Oxidase RBOHD by the PRR-Associated Kinase BIK1 during Plant Immunity
journal, April 2014
- Kadota, Yasuhiro; Sklenar, Jan; Derbyshire, Paul
- Molecular Cell, Vol. 54, Issue 1
Mutations in FLS2 Ser-938 Dissect Signaling Activation in FLS2-Mediated Arabidopsis Immunity
journal, April 2013
- Cao, Yangrong; Aceti, David J.; Sabat, Grzegorz
- PLoS Pathogens, Vol. 9, Issue 4
Structural Basis for flg22-Induced Activation of the Arabidopsis FLS2-BAK1 Immune Complex
journal, October 2013
- Sun, Y.; Li, L.; Macho, A. P.
- Science, Vol. 342, Issue 6158
BRI1/BAK1, a Receptor Kinase Pair Mediating Brassinosteroid Signaling
journal, July 2002
- Nam, Kyoung Hee; Li, Jianming
- Cell, Vol. 110, Issue 2
Molecular Mechanism for Plant Steroid Receptor Activation by Somatic Embryogenesis Co-Receptor Kinases
journal, August 2013
- Santiago, J.; Henzler, C.; Hothorn, M.
- Science, Vol. 341, Issue 6148
Enzymatic Activity of the Soybean Ecto-Apyrase GS52 Is Essential for Stimulation of Nodulation
journal, February 2011
- Tanaka, Kiwamu; Nguyen, Cuong T.; Libault, Marc
- Plant Physiology, Vol. 155, Issue 4
LYK4, a Lysin Motif Receptor-Like Kinase, Is Important for Chitin Signaling and Plant Innate Immunity in Arabidopsis
journal, June 2012
- Wan, Jinrong; Tanaka, Kiwamu; Zhang, Xue-Cheng
- Plant Physiology, Vol. 160, Issue 1
Receptor signaling: When dimerization is not enough
journal, August 1999
- Jiang, Guoqiang; Hunter, Tony
- Current Biology, Vol. 9, Issue 15
BAK1, an Arabidopsis LRR Receptor-like Protein Kinase, Interacts with BRI1 and Modulates Brassinosteroid Signaling
journal, July 2002
- Li, Jia; Wen, Jiangqi; Lease, Kevin A.
- Cell, Vol. 110, Issue 2
Receptor-like kinases from Arabidopsis form a monophyletic gene family related to animal receptor kinases
journal, August 2001
- Shiu, S. -H.; Bleecker, A. B.
- Proceedings of the National Academy of Sciences, Vol. 98, Issue 19