Transcriptional Responses to Sucrose Mimic the Plant-Associated Life Style of the Plant Growth Promoting Endophyte Enterobacter sp. 638
Abstract
Growth in sucrose medium was previously found to trigger the expression of functions involved in the plant associated life style of the endophytic bacterium Enterobacter sp. 638. Therefore, comparative transcriptome analysis between cultures grown in sucrose or lactate medium was used to gain insights in the expression levels of bacterial functions involved in the endophytic life style of strain 638. Growth on sucrose as a carbon source resulted in major changes in cell physiology, including a shift from a planktonic life style to the formation of bacterial aggregates. This shift was accompanied by a decrease in transcription of genes involved in motility (e.g. flagella biosynthesis) and an increase in the transcription of genes involved in colonization, adhesion and biofilm formation. The transcription levels of functions previously suggested as being involved in endophytic behavior and functions responsible for plant growth promoting properties, including the synthesis of indole-acetic acid, acetoin and 2,3-butanediol, also increased significantly for cultures grown in sucrose medium. Interestingly, despite an abundance of essential nutrients transcription levels of functions related to uptake and processing of nitrogen and iron became increased for cultures grown on sucrose as sole carbon source. Transcriptome data were also used to analyze putative regulatory relationships.more »
- Authors:
-
- RTI International, Research Triangle Park, NC (United States); Brookhaven National Lab. (BNL), Upton, NY (United States)
- Brookhaven National Lab. (BNL), Upton, NY (United States); State Univ. of New York (SUNY), Stony Brook, NY (United States)
- RTI International, Research Triangle Park, NC (United States); East China Univ. of Science and Technology, Shanghai (China)
- Brookhaven National Lab. (BNL), Upton, NY (United States)
- State Univ. of New York (SUNY), Stony Brook, NY (United States)
- Publication Date:
- Research Org.:
- Brookhaven National Laboratory (BNL), Upton, NY (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER)
- OSTI Identifier:
- 1178624
- Report Number(s):
- BNL-101232-2015-JA
Journal ID: ISSN 1932-6203; R&D Project: 08-079; YN0100000
- Grant/Contract Number:
- AC02-98CH10886; SC00112704; LDRD09-005
- Resource Type:
- Accepted Manuscript
- Journal Name:
- PLoS ONE
- Additional Journal Information:
- Journal Volume: 10; Journal Issue: 1; Journal ID: ISSN 1932-6203
- Publisher:
- Public Library of Science
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 54 ENVIRONMENTAL SCIENCES; Enterobacter sp. 638; transcriptome analysis; plant growth promoting; csrABCD regulon; rcsAB
Citation Formats
Taghavi, Safiyh, Wu, Xiao, Ouyang, Liming, Zhang, Yian Biao, Stadler, Andrea, McCorkle, Sean, Zhu, Wei, Maslov, Sergei, and van der Lelie, Daniel. Transcriptional Responses to Sucrose Mimic the Plant-Associated Life Style of the Plant Growth Promoting Endophyte Enterobacter sp. 638. United States: N. p., 2015.
Web. doi:10.1371/journal.pone.0115455.
Taghavi, Safiyh, Wu, Xiao, Ouyang, Liming, Zhang, Yian Biao, Stadler, Andrea, McCorkle, Sean, Zhu, Wei, Maslov, Sergei, & van der Lelie, Daniel. Transcriptional Responses to Sucrose Mimic the Plant-Associated Life Style of the Plant Growth Promoting Endophyte Enterobacter sp. 638. United States. https://doi.org/10.1371/journal.pone.0115455
Taghavi, Safiyh, Wu, Xiao, Ouyang, Liming, Zhang, Yian Biao, Stadler, Andrea, McCorkle, Sean, Zhu, Wei, Maslov, Sergei, and van der Lelie, Daniel. Wed .
"Transcriptional Responses to Sucrose Mimic the Plant-Associated Life Style of the Plant Growth Promoting Endophyte Enterobacter sp. 638". United States. https://doi.org/10.1371/journal.pone.0115455. https://www.osti.gov/servlets/purl/1178624.
@article{osti_1178624,
title = {Transcriptional Responses to Sucrose Mimic the Plant-Associated Life Style of the Plant Growth Promoting Endophyte Enterobacter sp. 638},
author = {Taghavi, Safiyh and Wu, Xiao and Ouyang, Liming and Zhang, Yian Biao and Stadler, Andrea and McCorkle, Sean and Zhu, Wei and Maslov, Sergei and van der Lelie, Daniel},
abstractNote = {Growth in sucrose medium was previously found to trigger the expression of functions involved in the plant associated life style of the endophytic bacterium Enterobacter sp. 638. Therefore, comparative transcriptome analysis between cultures grown in sucrose or lactate medium was used to gain insights in the expression levels of bacterial functions involved in the endophytic life style of strain 638. Growth on sucrose as a carbon source resulted in major changes in cell physiology, including a shift from a planktonic life style to the formation of bacterial aggregates. This shift was accompanied by a decrease in transcription of genes involved in motility (e.g. flagella biosynthesis) and an increase in the transcription of genes involved in colonization, adhesion and biofilm formation. The transcription levels of functions previously suggested as being involved in endophytic behavior and functions responsible for plant growth promoting properties, including the synthesis of indole-acetic acid, acetoin and 2,3-butanediol, also increased significantly for cultures grown in sucrose medium. Interestingly, despite an abundance of essential nutrients transcription levels of functions related to uptake and processing of nitrogen and iron became increased for cultures grown on sucrose as sole carbon source. Transcriptome data were also used to analyze putative regulatory relationships. In addition to the small RNA csrABCD regulon, which seems to play a role in the physiological adaptation and possibly the shift between free-living and plant-associated endophytic life style of Enterobacter sp. 638, our results also pointed to the involvement of rcsAB in controlling responses by Enterobacter sp. 638 to a plant-associated life style. Lastly, targeted mutagenesis was used to confirm this role and showed that compared to wild-type Enterobacter sp. 638 a ΔrcsB mutant was affected in its plant growth promoting ability.},
doi = {10.1371/journal.pone.0115455},
journal = {PLoS ONE},
number = 1,
volume = 10,
place = {United States},
year = {Wed Jan 21 00:00:00 EST 2015},
month = {Wed Jan 21 00:00:00 EST 2015}
}
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